Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10001899 |
Family | GH28 |
Protein Properties | Length: 174 Molecular Weight: 19390.5 Isoelectric Point: 10.4953 |
Chromosome | Chromosome/Scaffold: 255 Start: 15854 End: 17103 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 38 | 129 | 8.5e-28 |
RGESSMVEGENGTINGQGGVWWDMWRQRTVQYTRPSLVDLINSKGIIISNVIFKNSPFWKIHPVYSSHIVIRYVTILAPHDSPNTDGVDPGK |
Full Sequence |
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Protein Sequence Length: 174 Download |
MTLYLARGAT IKDTQLWSIF ATTGNVELLV APLPLYGRGE SSMVEGENGT INGQGGVWWD 60 MWRQRTVQYT RPSLVDLINS KGIIISNVIF KNSPFWKIHP VYSSHIVIRY VTILAPHDSP 120 NTDGVDPGKF SITGLWSMDI KKNGLHLKAS LKINSVKSRS YSLVSFRVLL RKV* 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 8.0e-5 | 49 | 125 | 80 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 8.0e-9 | 12 | 125 | 117 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-9 | 49 | 128 | 81 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 1.0e-9 | 40 | 131 | 92 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 3.0e-12 | 1 | 131 | 163 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI34471.1 | 1.4013e-45 | 1 | 127 | 98 | 234 | unnamed protein product [Vitis vinifera] |
GenBank | EAY99223.1 | 2.00386e-43 | 1 | 127 | 103 | 239 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
RefSeq | NP_001141464.1 | 5.04467e-44 | 1 | 127 | 99 | 235 | hypothetical protein LOC100273574 [Zea mays] |
RefSeq | XP_002304552.1 | 0 | 1 | 127 | 63 | 199 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 1 | 127 | 97 | 233 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.000000009 | 68 | 127 | 186 | 243 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.000000009 | 68 | 127 | 186 | 243 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.000000009 | 68 | 127 | 186 | 243 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.000000009 | 68 | 127 | 186 | 243 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00005 | 49 | 127 | 117 | 206 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FR601004 | 151 | 1 | 131 | 0 |
GR098630 | 149 | 1 | 131 | 0 |
CX541914 | 148 | 1 | 131 | 0 |
GT172426 | 144 | 1 | 127 | 0 |
GT705399 | 147 | 1 | 127 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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