| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10001954 |
| Family | GT31 |
| Protein Properties | Length: 547 Molecular Weight: 61720.9 Isoelectric Point: 7.2248 |
| Chromosome | Chromosome/Scaffold: 1801 Start: 88505 End: 93167 |
| Description | Galactosyltransferase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT31 | 133 | 303 | 1.9e-37 |
| RNVFRGSWMPRGDDALKKLEERGIVIRFVIGRSANRGDSLDRNIDEENSTTKDFLILEGHEEAEEELPKKAKFFYSTAVQNWDAEFYVKVDDQINLDLDG LIGLLERRRDQDSAYIGCMKSGDVVTEEGKQWYEPDWWKFGDEKSYFRHAAGPLIILSKNLSQYININSPT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 547 Download |
| MDTLPTTSKS DRRWRSKNLQ TSKPSLVMAF FSCLAWLYVA GRLWQDAENR MLLTSLLKTN 60 SAQRPKVLSV DDKLAVLGCK DLERRIVEAE MELTMAKSQG YLKYQLPQSK SASGQKLLAV 120 IGVYTGFGSR LSRNVFRGSW MPRGDDALKK LEERGIVIRF VIGRSANRGD SLDRNIDEEN 180 STTKDFLILE GHEEAEEELP KKAKFFYSTA VQNWDAEFYV KVDDQINLDL DGLIGLLERR 240 RDQDSAYIGC MKSGDVVTEE GKQWYEPDWW KFGDEKSYFR HAAGPLIILS KNLSQYININ 300 SPTNNGHAVQ VPQTGLLLYP IHLHTLQIAV PICSHQNTSS PTSSGHRKEK AIVSALHFSH 360 LIPSGNQRQE LRRNRRESST GQHDDKEEGA VSKSEGNVGM YVCGVTASDL SNIGHARVYV 420 TFDVLNRSSM AAAVCSLCLN WYLKHLGYDV SYVRNFTDVN DKIIKRAIEL GEDPISLSRR 480 YCEEFHHDIV SLQCLPPSVE PRVSDHIPHI VDMINKILDN GCAYRIDGDV YFSVDKFPEY 540 GQLSGR* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR00435 | cysS | 7.0e-51 | 394 | 546 | 154 | + cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. | ||
| pfam01406 | tRNA-synt_1e | 1.0e-52 | 394 | 546 | 154 | + tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases. | ||
| COG0215 | CysS | 1.0e-60 | 391 | 546 | 157 | + Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | ||
| PRK00260 | cysS | 3.0e-68 | 395 | 546 | 152 | + cysteinyl-tRNA synthetase; Validated | ||
| PLN02946 | PLN02946 | 7.0e-83 | 393 | 546 | 154 | + cysteine-tRNA ligase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000166 | nucleotide binding |
| GO:0004817 | cysteine-tRNA ligase activity |
| GO:0005524 | ATP binding |
| GO:0005737 | cytoplasm |
| GO:0006412 | translation |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN78789.1 | 0 | 10 | 303 | 4 | 297 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_194939.1 | 0 | 1 | 301 | 1 | 301 | galactosyltransferase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002285482.1 | 0 | 10 | 303 | 4 | 297 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324311.1 | 0 | 3 | 308 | 4 | 308 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515480.1 | 0 | 1 | 308 | 1 | 309 | galactosyltransferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3tqo_A | 8e-33 | 396 | 546 | 24 | 161 | A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From Coxiella Burnetii |
| PDB | 1u0b_B | 2e-32 | 396 | 544 | 21 | 156 | A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From Coxiella Burnetii |
| PDB | 1li7_B | 2e-32 | 396 | 544 | 21 | 156 | A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From Coxiella Burnetii |
| PDB | 1li7_A | 2e-32 | 396 | 544 | 21 | 156 | A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From Coxiella Burnetii |
| PDB | 1li5_B | 2e-32 | 396 | 544 | 21 | 156 | A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase |
