Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10002123 |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 41644 Isoelectric Point: 7.9393 |
Chromosome | Chromosome/Scaffold: 1052 Start: 78932 End: 80655 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 385 | 0 |
QACRSSSPSTVVYVPAGRFALKNLAFQGPCKTKSIMFLIDGTLVAPSDYGEIGTIGNWIMFHAVDGVTISGGTLDGRGAALWSCKSKSKSSKDCPEGATN LEFSNSKNIRINGLTSVNSQLFHIVINSCQNVKVQGVRVSAAGNSPNTDGIHVQSSTGVTITNSRIGTGDDCISIGPGTTNLWIENISCGPGHGISIGSL GKEFHEAGVSNVTVKAVTFTGTENGVRIKSWGRPSTGFAKDILFQHAVMNNVHNPIVIDQNYCPDEKNCPGQASGVKVSDVTYQDIRGSSETEVAVKFTC SGSNPCTGIRLEDVKLTYKNKAADSSCKNADGM |
Full Sequence |
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Protein Sequence Length: 397 Download |
MATFHLLFSL ITVICYLATS SVAVPAQYSI TTYGAKPDGN TDSTKAFLAA WNQACRSSSP 60 STVVYVPAGR FALKNLAFQG PCKTKSIMFL IDGTLVAPSD YGEIGTIGNW IMFHAVDGVT 120 ISGGTLDGRG AALWSCKSKS KSSKDCPEGA TNLEFSNSKN IRINGLTSVN SQLFHIVINS 180 CQNVKVQGVR VSAAGNSPNT DGIHVQSSTG VTITNSRIGT GDDCISIGPG TTNLWIENIS 240 CGPGHGISIG SLGKEFHEAG VSNVTVKAVT FTGTENGVRI KSWGRPSTGF AKDILFQHAV 300 MNNVHNPIVI DQNYCPDEKN CPGQASGVKV SDVTYQDIRG SSETEVAVKF TCSGSNPCTG 360 IRLEDVKLTY KNKAADSSCK NADGMASGVV QPSSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-90 | 55 | 382 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-96 | 20 | 392 | 377 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-99 | 30 | 396 | 372 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-112 | 4 | 395 | 407 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 4.0e-141 | 3 | 396 | 395 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD33834.1 | 0 | 1 | 396 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
RefSeq | XP_002309716.1 | 0 | 1 | 396 | 1 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310385.1 | 0 | 4 | 396 | 10 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 8 | 396 | 9 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529092.1 | 0 | 6 | 396 | 5 | 394 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-24 | 124 | 369 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 5e-19 | 122 | 387 | 103 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 5e-19 | 122 | 387 | 103 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1hg8_A | 0.000000000000003 | 122 | 380 | 77 | 341 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 0.000000000000005 | 122 | 381 | 76 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |