Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10002124 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 41149.9 Isoelectric Point: 9.4779 |
Chromosome | Chromosome/Scaffold: 1052 Start: 83543 End: 84950 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 379 | 0 |
AWKQACGSTKPVTLYVPKGRFLTKSMELTGPCKNNAIFIRIDGTLVAPSNIWAIGNNPNWIGFRYVDGLTISGGVLDGQGAGLWACKTAGRKCPTGVTSL GFSFCKNVLVSGLTSLNSQMFHIVINYSNNLKLKGVKVSAPGNSPNTDGIHVQMSTGVSIVGTKIGTGDDCVSVGPGAANLWIENVSCGPGHGISIGSLG KDVNEAGVQNVTVKSTTFTGTTNGVRIKAWGKQSNGFARNILFQHSTMNNVQNPIIIDQRYCPEHNCADSASGVKVSDVTYQDIHGTSATQVALKFDCSK RNPCRGIRLDNVRLTYKNQPAVASCANAAG |
Full Sequence |
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Protein Sequence Length: 392 Download |
MNNSVLSLLS LLLPIALLSQ ASAAAPQLNV VQFGAKPDGR TDSTKAFVAA WKQACGSTKP 60 VTLYVPKGRF LTKSMELTGP CKNNAIFIRI DGTLVAPSNI WAIGNNPNWI GFRYVDGLTI 120 SGGVLDGQGA GLWACKTAGR KCPTGVTSLG FSFCKNVLVS GLTSLNSQMF HIVINYSNNL 180 KLKGVKVSAP GNSPNTDGIH VQMSTGVSIV GTKIGTGDDC VSVGPGAANL WIENVSCGPG 240 HGISIGSLGK DVNEAGVQNV TVKSTTFTGT TNGVRIKAWG KQSNGFARNI LFQHSTMNNV 300 QNPIIIDQRY CPEHNCADSA SGVKVSDVTY QDIHGTSATQ VALKFDCSKR NPCRGIRLDN 360 VRLTYKNQPA VASCANAAGT NYGLVQPNNC L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-83 | 55 | 377 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-86 | 30 | 391 | 371 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-88 | 29 | 387 | 366 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 6.0e-104 | 29 | 390 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 7.0e-126 | 29 | 391 | 365 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309718.1 | 0 | 1 | 391 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529089.1 | 0 | 7 | 391 | 9 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 4 | 391 | 7 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529091.1 | 0 | 1 | 391 | 1 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529092.1 | 0 | 1 | 391 | 1 | 394 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-20 | 154 | 364 | 159 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000001 | 122 | 374 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000001 | 122 | 374 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000001 | 122 | 374 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000001 | 122 | 374 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |