Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10002125 |
Family | GH28 |
Protein Properties | Length: 391 Molecular Weight: 40976 Isoelectric Point: 8.1582 |
Chromosome | Chromosome/Scaffold: 1052 Start: 88174 End: 89825 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 379 | 0 |
AWNQACDSASPSTVYVPAGRFFLRNVAFQGPCKSKSILMRIYGTLVAPSDYSVIASVGKWIAFHNVDGVTVSGGTLDGQGSSLWSCKASGKSCPAGARNL EFSGSKNIHINGLSSVNSQLFHIVIDGRENVKVQGVRVSAAGNSPNTDGIHVQSSTGVTITNSRIGTGDDCVSIGPGTTNLWIENISCGPGHGISIGSLG KQFNEAGVSNVTVKTVTFTGTENGVRIKSWGRPSTGFARGILFQHAVMNNVHNPIVIDQNYCPNEENCPGQASGVKVSDVTYRDIHGSSQTEVAVKFACS MKNPCTGIKLEDVKLSYKNKAADSSCQNADGT |
Full Sequence |
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Protein Sequence Length: 391 Download |
MAAPIITFFL LTIYYSTLSA AAIIQYSVTS YGAKPDGRTD STDAFLAAWN QACDSASPST 60 VYVPAGRFFL RNVAFQGPCK SKSILMRIYG TLVAPSDYSV IASVGKWIAF HNVDGVTVSG 120 GTLDGQGSSL WSCKASGKSC PAGARNLEFS GSKNIHINGL SSVNSQLFHI VIDGRENVKV 180 QGVRVSAAGN SPNTDGIHVQ SSTGVTITNS RIGTGDDCVS IGPGTTNLWI ENISCGPGHG 240 ISIGSLGKQF NEAGVSNVTV KTVTFTGTEN GVRIKSWGRP STGFARGILF QHAVMNNVHN 300 PIVIDQNYCP NEENCPGQAS GVKVSDVTYR DIHGSSQTEV AVKFACSMKN PCTGIKLEDV 360 KLSYKNKAAD SSCQNADGTA SGFVQPSSCL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-92 | 53 | 381 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-94 | 27 | 386 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-99 | 28 | 390 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-110 | 16 | 389 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-145 | 1 | 390 | 393 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002310385.1 | 0 | 5 | 390 | 13 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331621.1 | 0 | 1 | 390 | 9 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529089.1 | 0 | 5 | 390 | 10 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 6 | 390 | 9 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529091.1 | 0 | 1 | 390 | 1 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-25 | 94 | 363 | 85 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-16 | 42 | 375 | 6 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-16 | 42 | 375 | 6 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-16 | 42 | 375 | 6 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-16 | 42 | 375 | 6 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |