Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10002727 |
Family | GH28 |
Protein Properties | Length: 378 Molecular Weight: 41044.5 Isoelectric Point: 6.889 |
Chromosome | Chromosome/Scaffold: 735 Start: 90090 End: 93563 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 123 | 362 | 0 |
RIQALSFQNCNNLLLSSTSHVNSQKRHILLNHCKGVEISNIRIIAPESSPNTDGIGILASSQVNIHDSFIGTGDDCVSINAFSSLVNISRVMCGPGHGIS IGSLGKNGAYETVEDVHVQDCTFRNTMYGARIKTWKGGRGYVRNVRFEKITLNNAGNPIIIDQEYINRLAWTQYYSSGDHIEISGVTYRGVIGSSSDQRA VYFNCAGGSGCRNIVVENEKIKAAVQGEELIAVCNNAHGR |
Full Sequence |
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Protein Sequence Length: 378 Download |
MAAPTTLLLI LLVFLAAQSC LCYRSPDQVK YIDDYRSMDD SRRYIDGFLD DYANGQAAGA 60 SATFNVLRYG AVGDDFTDSS KAFLKTWEDF CGAAGQPTLV IPDKVFLLKP VAFFGPCKSQ 120 KLRIQALSFQ NCNNLLLSST SHVNSQKRHI LLNHCKGVEI SNIRIIAPES SPNTDGIGIL 180 ASSQVNIHDS FIGTGDDCVS INAFSSLVNI SRVMCGPGHG ISIGSLGKNG AYETVEDVHV 240 QDCTFRNTMY GARIKTWKGG RGYVRNVRFE KITLNNAGNP IIIDQEYINR LAWTQYYSSG 300 DHIEISGVTY RGVIGSSSDQ RAVYFNCAGG SGCRNIVVEN EKIKAAVQGE ELIAVCNNAH 360 GRATSDCTPM VSCLLPE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 3.0e-61 | 64 | 369 | 371 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-64 | 118 | 360 | 243 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-71 | 60 | 362 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 9.0e-75 | 56 | 374 | 375 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 8.0e-87 | 64 | 374 | 361 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28723.1 | 0 | 61 | 375 | 13 | 391 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABO81149.1 | 0 | 67 | 374 | 1 | 368 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002266543.1 | 0 | 65 | 374 | 21 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 59 | 375 | 13 | 373 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002332134.1 | 0 | 64 | 374 | 18 | 360 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-16 | 117 | 287 | 141 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000001 | 173 | 331 | 152 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000001 | 173 | 331 | 152 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000001 | 173 | 331 | 152 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000001 | 173 | 331 | 152 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |