PlantCAZyme

Basic Information
Species	Linum usitatissimum
Cazyme ID	Lus10002931
Family	GH28
Protein Properties	Length: 397 Molecular Weight: 43283.6 Isoelectric Point: 8.4251
Chromosome	Chromosome/Scaffold: 1060 Start: 31977 End: 33381
Description	Pectin lyase-like superfamily protein
View CDS

External Links
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH28	53	382	0
KACKSERESRIVIPEGNYVMGMVGLEGPCKSDEIHVQIDGYIKTPPTGLRGLSWITFSSLRNLQLYGNGTLDGQGPLASKASNNRKNMPHLPLATNLRFE SITNAIIQGLTSKDSRNFHIDVSRSKNVTLRSLTITAPLDSNTTVGIFLRRSHQVTISDATIQTGHYCIHLSDGSQEVNIHNMKCGPGGGGGVLLGTLGR SPDEEKVFDVAVVNSSFISTANGLRIEAVPGTINMASNISFDDITMDNVINPITIDQHFCQDKSCDKMEGKVKIKDVSFKNIKGSCASPLAINISCYNPS FCKNVQFTDIEFKPSSKNLEPLKFQCTNVK

Full Sequence
Protein Sequence Length: 397 Download
MNSSIVVSLS LWISFFTICT HGRDPKILDV TRFGAKPDDK TDITQGLMKA WIKACKSERE 60 SRIVIPEGNY VMGMVGLEGP CKSDEIHVQI DGYIKTPPTG LRGLSWITFS SLRNLQLYGN 120 GTLDGQGPLA SKASNNRKNM PHLPLATNLR FESITNAIIQ GLTSKDSRNF HIDVSRSKNV 180 TLRSLTITAP LDSNTTVGIF LRRSHQVTIS DATIQTGHYC IHLSDGSQEV NIHNMKCGPG 240 GGGGVLLGTL GRSPDEEKVF DVAVVNSSFI STANGLRIEA VPGTINMASN ISFDDITMDN 300 VINPITIDQH FCQDKSCDKM EGKVKIKDVS FKNIKGSCAS PLAINISCYN PSFCKNVQFT 360 DIEFKPSSKN LEPLKFQCTN VKIIKKGLVS PPNECQ*

Full Sequence

Protein Sequence Length: 397 Download

MNSSIVVSLS LWISFFTICT HGRDPKILDV TRFGAKPDDK TDITQGLMKA WIKACKSERE    60
SRIVIPEGNY VMGMVGLEGP CKSDEIHVQI DGYIKTPPTG LRGLSWITFS SLRNLQLYGN    120
GTLDGQGPLA SKASNNRKNM PHLPLATNLR FESITNAIIQ GLTSKDSRNF HIDVSRSKNV    180
TLRSLTITAP LDSNTTVGIF LRRSHQVTIS DATIQTGHYC IHLSDGSQEV NIHNMKCGPG    240
GGGGVLLGTL GRSPDEEKVF DVAVVNSSFI STANGLRIEA VPGTINMASN ISFDDITMDN    300
VINPITIDQH FCQDKSCDKM EGKVKIKDVS FKNIKGSCAS PLAINISCYN PSFCKNVQFT    360
DIEFKPSSKN LEPLKFQCTN VKIIKKGLVS PPNECQ* 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PLN03010	PLN03010	1.0e-48	26	382	365	+ polygalacturonase
PLN02793	PLN02793	2.0e-55	20	392	382	+ Probable polygalacturonase
PLN02218	PLN02218	1.0e-55	23	391	376	+ polygalacturonase ADPG
PLN02188	PLN02188	2.0e-66	27	392	376	+ polygalacturonase/glycoside hydrolase family protein
pfam00295	Glyco_hydro_28	9.0e-69	55	383	336	+ Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.

Gene Ontology
GO Term	Description
GO:0004650	polygalacturonase activity
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
DDBJ	BAA89478.1	0	27	390	30	389	polygalacturonase [Salix gilgiana]
DDBJ	BAA89479.1	0	27	390	30	389	polygalacturonase [Salix gilgiana]
Swiss-Prot	Q39766	0	4	391	10	392	PGLR_GOSBA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor
Swiss-Prot	Q39786	0	4	391	10	392	PGLR_GOSHI RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor
RefSeq	XP_002329175.1	0	3	390	7	389	predicted protein [Populus trichocarpa]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1bhe_A	0.00000000004	105	345	101	344	A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
PDB	1ib4_B	0.0000000001	107	381	76	333	A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
PDB	1ib4_A	0.0000000001	107	381	76	333	A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
PDB	1ia5_A	0.0000000001	107	381	76	333	A Chain A, Polygalacturonase From Aspergillus Aculeatus
PDB	1rmg_A	0.000005	26	372	19	346	A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus

Signal Peptide

Cleavage Site
22

EST Download unfiltered results here

Hit	Length	Start	End	EValue
CO114621	289	30	312	0
CO101156	288	31	312	0
CO101142	288	31	312	0
CO117610	286	30	309	0
CO114206	285	30	308	0

Orthologous Group
Species	ID
Linum usitatissimum	Lus10003531

CAZyme Information