Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10003176 |
Family | AA3 |
Protein Properties | Length: 610 Molecular Weight: 67015.5 Isoelectric Point: 9.2424 |
Chromosome | Chromosome/Scaffold: 507 Start: 60056 End: 84423 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 59 | 602 | 0 |
STFSSSSSFSSSGTAADKSYDYIIVGGGTAGCPLATTLSRKFSVLLLERGGVPFSNSNVTFLRNFHIALADTSPTSASQYFVSTDGVLNARARVLGGGTS INAGFYTRANQRFIEKVGWDTRLVNESYPWVEKQIVHRPQVEPWQVAVRDSLLDLGVSPFNGFTYDHIYGTKFGGTIFDRFGRRHTAAELLATANPRRLT VLVHATVQRVVFDTSGRMPKAVGVVFKDEKGNQHQAFLASNPRSEVILSSGAIGTPQMMLLSGIGPKSDLEKLNIPIVLDSKYVGKGMADNPMNAIFIPS NMPINQSLIQTVGITKLGVYIEASSGFGESKDSIECHHGIMSAEIGQLSTIPPKQRTAEEVQAYIHRKKELPHEAFKGGFILEKIAKPISTGQLSLANTN ADDNPSISFNYFSHPKDLERCVDGIRLATKMVQSKPFTDMLKCDKQTTEKILNASVHANVNLVPKHPNDTKSLEQFCRDTVITIWHYHGGCHVGKVVNPE NKVIGVHRLRIVDGSTFDESPGTNPQATVMMMGRYMGLKILQDR |
Full Sequence |
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Protein Sequence Length: 610 Download |
MTIDPHFMEA NDFLLPFKLS TPLGGLKKML NHYVEGDDAG NWKKEDYYEF KYPFIRKAST 60 FSSSSSFSSS GTAADKSYDY IIVGGGTAGC PLATTLSRKF SVLLLERGGV PFSNSNVTFL 120 RNFHIALADT SPTSASQYFV STDGVLNARA RVLGGGTSIN AGFYTRANQR FIEKVGWDTR 180 LVNESYPWVE KQIVHRPQVE PWQVAVRDSL LDLGVSPFNG FTYDHIYGTK FGGTIFDRFG 240 RRHTAAELLA TANPRRLTVL VHATVQRVVF DTSGRMPKAV GVVFKDEKGN QHQAFLASNP 300 RSEVILSSGA IGTPQMMLLS GIGPKSDLEK LNIPIVLDSK YVGKGMADNP MNAIFIPSNM 360 PINQSLIQTV GITKLGVYIE ASSGFGESKD SIECHHGIMS AEIGQLSTIP PKQRTAEEVQ 420 AYIHRKKELP HEAFKGGFIL EKIAKPISTG QLSLANTNAD DNPSISFNYF SHPKDLERCV 480 DGIRLATKMV QSKPFTDMLK CDKQTTEKIL NASVHANVNL VPKHPNDTKS LEQFCRDTVI 540 TIWHYHGGCH VGKVVNPENK VIGVHRLRIV DGSTFDESPG TNPQATVMMM GRYMGLKILQ 600 DRLGKAAGV* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
TIGR01810 | betA | 2.0e-20 | 79 | 349 | 308 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. |
pfam05199 | GMC_oxred_C | 3.0e-27 | 446 | 591 | 151 | + GMC oxidoreductase. This domain found associated with pfam00732. |
TIGR03970 | Rv0697 | 3.0e-27 | 79 | 591 | 559 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. |
COG2303 | BetA | 2.0e-50 | 72 | 602 | 584 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] |
PLN02785 | PLN02785 | 0 | 43 | 609 | 567 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI35951.1 | 0 | 44 | 609 | 29 | 593 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275841.1 | 0 | 44 | 609 | 20 | 584 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327436.1 | 0 | 75 | 609 | 14 | 547 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002329018.1 | 0 | 47 | 609 | 29 | 591 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527404.1 | 0 | 41 | 608 | 29 | 596 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ju2_B | 0 | 64 | 602 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 1ju2_A | 0 | 64 | 602 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_B | 0 | 64 | 602 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 0 | 64 | 602 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 0 | 64 | 602 | 13 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO796743 | 532 | 79 | 610 | 0 |
HO852522 | 376 | 230 | 605 | 0 |
ES808127 | 408 | 174 | 579 | 0 |
CK271873 | 316 | 77 | 392 | 0 |
EX670905 | 297 | 136 | 432 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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