| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10003307 |
| Family | PL1 |
| Protein Properties | Length: 331 Molecular Weight: 37135 Isoelectric Point: 7.2871 |
| Chromosome | Chromosome/Scaffold: 762 Start: 119696 End: 121058 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 64 | 241 | 0 |
| DVSGIIELKTFLSVSSYKTIDGRGQRIKFTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQVKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYF AQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWAIYAVCASVEAQIYSESNIYEAA | |||
| Full Sequence |
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| Protein Sequence Length: 331 Download |
| MTSLPYADAD DHMRALACRA EGFGRTAIGG LHGALYSVTS LADDGPGSLR EGCRRKEPLW 60 IVFDVSGIIE LKTFLSVSSY KTIDGRGQRI KFTGKGLRLK ECEHIIICNL EFEGGRGHDV 120 DGIQVKPNSR HIWIDRCSLR DYDDGLIDIT RQSTDITVSR CYFAQHDKTM LIGADPTHVG 180 DRCIRVTIHH CFFDGTRQRQ PRLRFGKVHL YNNYTRNWAI YAVCASVEAQ IYSESNIYEA 240 AEKKRTFEYY TEKAADAEEG KSGCIKSVGD VFLNGALPSL QPGIAEHAVF QPNEHYQKWT 300 VETPSDSLKE VLQVCAGWQA IPRPKEKIQN * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 4.0e-40 | 56 | 236 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 5.0e-46 | 29 | 317 | 309 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 7.0e-69 | 75 | 241 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB75748.1 | 0 | 1 | 326 | 1 | 336 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191074.2 | 0 | 1 | 326 | 1 | 326 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002276049.1 | 0 | 1 | 326 | 1 | 326 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311134.1 | 0 | 1 | 324 | 1 | 324 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526780.1 | 0 | 1 | 312 | 1 | 312 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 1.96182e-44 | 7 | 297 | 12 | 328 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 1.96182e-44 | 7 | 297 | 12 | 328 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-29 | 28 | 238 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 2e-24 | 72 | 238 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 2e-22 | 82 | 239 | 82 | 247 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG177860 | 311 | 21 | 331 | 0 |
| DY275282 | 326 | 1 | 326 | 0 |
| DY277275 | 310 | 4 | 313 | 0 |
| DW066041 | 300 | 25 | 324 | 0 |
| DY277275 | 22 | 305 | 326 | 0.2 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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