| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10003531 |
| Family | GH28 |
| Protein Properties | Length: 546 Molecular Weight: 59981.6 Isoelectric Point: 5.2558 |
| Chromosome | Chromosome/Scaffold: 144 Start: 137125 End: 140864 |
| Description | |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 4 | 245 | 0 |
| VGLEGPCKSDEIHVQIDGYIRTPPTGLRGLSWITFSSLGNLTVYGNGTLDGQGPLASKASNNRKNMPHLPLATNLRFESITNAIIQGLTSKDSRNFHIDV SRSMNVTLRRLTVTAPLDSNTTVGIFLRRSHLVTISDATIQTGHYCIHLSDGSQEVNIHNMTCGPGGGGGVLLGTLGRSPDEEKVFDVAVGNSSFISTAN GLRIEAVPGTINVASNISFDDITMDKVNNPITIDQHFCQDKS | |||
| Full Sequence |
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| Protein Sequence Length: 546 Download |
| MGMVGLEGPC KSDEIHVQID GYIRTPPTGL RGLSWITFSS LGNLTVYGNG TLDGQGPLAS 60 KASNNRKNMP HLPLATNLRF ESITNAIIQG LTSKDSRNFH IDVSRSMNVT LRRLTVTAPL 120 DSNTTVGIFL RRSHLVTISD ATIQTGHYCI HLSDGSQEVN IHNMTCGPGG GGGVLLGTLG 180 RSPDEEKVFD VAVGNSSFIS TANGLRIEAV PGTINVASNI SFDDITMDKV NNPITIDQHF 240 CQDKSCDKEI RYLLMDSLEF QDWEVLTHPD LDAVSSLVLT DNPRHLEEIE ADSSGMIRLD 300 YFSLANDSMS GKVAVTATSD VESSVGSNNP SWIDPATDVR YESKNHCGFW SDLGSDRSDG 360 RKASDLGLKS DQFTGADETE AKDVAFDRVK DEFSSCQRKT DQVAGFQENK TNYCSDEVVS 420 GNDSEEDNSS VDEAAVEEVK KQVVWWKVPL ELLKFCVFRV SPVWTFSMAA AVMGFLVLGR 480 RLYNMKRKAK TLQLKVTVDD KKVSQFMSRA ARLNEAFSVA RRIPIVRPML PPAGVNSWPV 540 MNMRW* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 9.0e-30 | 6 | 249 | 250 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-31 | 4 | 241 | 244 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 2.0e-32 | 6 | 240 | 240 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 9.0e-36 | 32 | 246 | 220 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-50 | 1 | 249 | 254 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 4 | 246 | 74 | 316 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002325938.1 | 0 | 296 | 544 | 1 | 302 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002327305.1 | 0 | 259 | 544 | 10 | 290 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333303.1 | 0 | 4 | 255 | 74 | 325 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525504.1 | 0 | 257 | 544 | 6 | 325 | conserved hypothetical protein [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000001 | 34 | 240 | 101 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00002 | 52 | 240 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00002 | 52 | 240 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00002 | 52 | 240 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00002 | 52 | 240 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Transmembrane Domains | |||||
|---|---|---|---|---|---|
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| Start | End | ||||
| 460 | 479 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| JG207592 | 194 | 353 | 546 | 0 |
| JG204468 | 195 | 352 | 546 | 0 |
| JG172619 | 191 | 356 | 546 | 0 |
| JG020761 | 183 | 364 | 546 | 0 |
| JG199924 | 170 | 377 | 546 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Linum usitatissimum | Lus10002931 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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