Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10003782 |
Family | GH28 |
Protein Properties | Length: 430 Molecular Weight: 46224.9 Isoelectric Point: 6.873 |
Chromosome | Chromosome/Scaffold: 89 Start: 19344 End: 21147 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 81 | 417 | 0 |
QACKKCPDPTKLLIPEGIYLSSPVIFQGPCVSKVPILVEVRGNIIASGDLSTYAEDYWFMFNKINGLILNGGGTFDGRGPQVWATVKKGSKGNRPSSIVI RSVDNVVVHDIISVDSKFFHYHVSRCDNFTAFNLRMTAPDDSPNTDGIHISSSNGVHISNSIIATGDDCISVGHGVNNANIFGITCGPGHGISIGSLGKR EGETDVCGITVTNCTLIKTDNGVRIKTFASKIPLKASSITFQDIIMHEVENPIIIDQNYGSKNKNGASNVKVSAVKYKNIRGTTVSNEGIVLDCSTVAGC DGIEFVDVCLDFVTNPAIQSDKAIAAGFTAICNNVKT |
Full Sequence |
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Protein Sequence Length: 430 Download |
MSIEIELLSR RIVIFISLLI FLSSFTYGSL KEVNIPHRGL HVVDPPPNIE VPRTIVDVMH 60 FGAKANGKDD DVTAFMQAWQ QACKKCPDPT KLLIPEGIYL SSPVIFQGPC VSKVPILVEV 120 RGNIIASGDL STYAEDYWFM FNKINGLILN GGGTFDGRGP QVWATVKKGS KGNRPSSIVI 180 RSVDNVVVHD IISVDSKFFH YHVSRCDNFT AFNLRMTAPD DSPNTDGIHI SSSNGVHISN 240 SIIATGDDCI SVGHGVNNAN IFGITCGPGH GISIGSLGKR EGETDVCGIT VTNCTLIKTD 300 NGVRIKTFAS KIPLKASSIT FQDIIMHEVE NPIIIDQNYG SKNKNGASNV KVSAVKYKNI 360 RGTTVSNEGI VLDCSTVAGC DGIEFVDVCL DFVTNPAIQS DKAIAAGFTA ICNNVKTTYV 420 GTNKIPICE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-69 | 54 | 383 | 340 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 8.0e-73 | 55 | 392 | 345 | + polygalacturonase | ||
PLN02793 | PLN02793 | 7.0e-73 | 52 | 390 | 352 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-80 | 89 | 418 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-96 | 54 | 428 | 383 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36886.1 | 0 | 54 | 428 | 43 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 53 | 429 | 53 | 427 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301488.1 | 0 | 72 | 397 | 1 | 328 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0 | 54 | 428 | 44 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002336609.1 | 0 | 74 | 390 | 1 | 318 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 9e-17 | 152 | 390 | 81 | 321 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1ib4_A | 9e-17 | 152 | 390 | 81 | 321 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1ia5_A | 9e-17 | 152 | 390 | 81 | 321 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1bhe_A | 1e-16 | 151 | 372 | 115 | 342 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 9e-16 | 152 | 363 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |