Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10003833 |
Family | AA3 |
Protein Properties | Length: 311 Molecular Weight: 33887.5 Isoelectric Point: 9.8796 |
Chromosome | Chromosome/Scaffold: 650 Start: 175083 End: 176767 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 52 | 307 | 5.1e-32 |
KASTFTSSSSFSSSGTAADKSYDYIIVGGGTAGCPLATTLSRKFSVLLLERGGVPFSNSNVTFLRNFHIALADTSPTSASQYFVSTDGVLNARARVLGGG TSINAGFYTRANQRFIEKVGWDTRLVNESYPWVEKQIVHRPQVEPWQVAVRDSLLDLGVSPFNGFTYDHIYGTKFGGTIFDRFGRRHTAAELLVTANRRR LTVLVHATVQRVVFDTSGRMPKAVGVVFKDEKGNQHQAFLGSNPRSEVILSSGAID |
Full Sequence |
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Protein Sequence Length: 311 Download |
MVVPGADIAG GAVMSITTKL LFLSSFLLML LLSSSQGKEE EYYEFKYPFI RKASTFTSSS 60 SFSSSGTAAD KSYDYIIVGG GTAGCPLATT LSRKFSVLLL ERGGVPFSNS NVTFLRNFHI 120 ALADTSPTSA SQYFVSTDGV LNARARVLGG GTSINAGFYT RANQRFIEKV GWDTRLVNES 180 YPWVEKQIVH RPQVEPWQVA VRDSLLDLGV SPFNGFTYDH IYGTKFGGTI FDRFGRRHTA 240 AELLVTANRR RLTVLVHATV QRVVFDTSGR MPKAVGVVFK DEKGNQHQAF LGSNPRSEVI 300 LSSGAIDHVA * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 3.0e-7 | 229 | 306 | 80 | + choline dehydrogenase; Validated | ||
PRK02106 | PRK02106 | 3.0e-11 | 69 | 165 | 107 | + choline dehydrogenase; Validated | ||
TIGR01810 | betA | 2.0e-12 | 74 | 307 | 271 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 8.0e-20 | 67 | 306 | 279 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 4.0e-165 | 45 | 306 | 262 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001154469.1 | 0 | 33 | 306 | 21 | 296 | HTH (HOTHEAD); FAD binding / aldehyde-lyase/ mandelonitrile lyase [Arabidopsis thaliana] |
RefSeq | XP_002275841.1 | 0 | 21 | 306 | 1 | 286 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327436.1 | 0 | 70 | 306 | 14 | 249 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002329018.1 | 0 | 32 | 306 | 20 | 293 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527404.1 | 0 | 39 | 306 | 33 | 299 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 59 | 306 | 13 | 260 | A Chain A, Golgi Alpha-Mannosidase Ii |
PDB | 3gdp_A | 0 | 59 | 306 | 13 | 260 | A Chain A, Golgi Alpha-Mannosidase Ii |
PDB | 3gdn_B | 0 | 59 | 306 | 13 | 260 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 59 | 306 | 13 | 260 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 59 | 306 | 13 | 260 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |