Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10003890 |
Family | GH28 |
Protein Properties | Length: 453 Molecular Weight: 49643.4 Isoelectric Point: 8.8219 |
Chromosome | Chromosome/Scaffold: 254 Start: 72065 End: 74014 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 424 | 0 |
RGGTLLYIPPGDYLTESFNLTSHMTLYLARGATIKATQKTWNWPLVAPLPSYGRGRELPGGRYMSFIHADGVHDVVITGENGTIDGQGGVWWDMWRQQTL RYTRPGLVELMNSKGIIISNVIFKNSPFWNIHPVYSSHIVIRYVTILAPHDSPNTDGVDPDSSSNVCIEDSYITTGDDLVAVKSGWDEYGIAYGRRSSYI TIRRVTGSSPFAGIAIGSETSGGVENVLAENINLYNMGIGIHIKTNMGRGGFIRNITFANVYMEDVRTGIKISGDVGDHPDGNFNPNALPTVKGITLKGI WGQKVQQPGLIRGLKDSPFEGVCMSNINLHSSVPRPRSSQQPWKCSDVSG |
Full Sequence |
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Protein Sequence Length: 453 Download |
MSKFHLIPVL LCCAVLAASF WVSDARQATC SGIVPMRYRS DKISIKDFGG VGDGRTLNTK 60 AFREAIYRIQ HLRRRGGTLL YIPPGDYLTE SFNLTSHMTL YLARGATIKA TQKTWNWPLV 120 APLPSYGRGR ELPGGRYMSF IHADGVHDVV ITGENGTIDG QGGVWWDMWR QQTLRYTRPG 180 LVELMNSKGI IISNVIFKNS PFWNIHPVYS SHIVIRYVTI LAPHDSPNTD GVDPDSSSNV 240 CIEDSYITTG DDLVAVKSGW DEYGIAYGRR SSYITIRRVT GSSPFAGIAI GSETSGGVEN 300 VLAENINLYN MGIGIHIKTN MGRGGFIRNI TFANVYMEDV RTGIKISGDV GDHPDGNFNP 360 NALPTVKGIT LKGIWGQKVQ QPGLIRGLKD SPFEGVCMSN INLHSSVPRP RSSQQPWKCS 420 DVSGVAIEVS PSPCSELAST HYRATSSCSH HF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 7.0e-22 | 37 | 403 | 385 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-25 | 40 | 346 | 315 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-29 | 43 | 403 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-33 | 106 | 435 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 8.0e-56 | 44 | 354 | 333 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 7 | 440 | 8 | 434 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 1 | 449 | 1 | 444 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 7 | 452 | 6 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 36 | 452 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 29 | 452 | 28 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6e-40 | 42 | 400 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6e-40 | 42 | 400 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6e-40 | 42 | 400 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6e-40 | 42 | 400 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-21 | 87 | 346 | 52 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |