Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10004281 |
Family | PL4 |
Protein Properties | Length: 681 Molecular Weight: 78626.5 Isoelectric Point: 7.7772 |
Chromosome | Chromosome/Scaffold: 1884 Start: 54188 End: 59325 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 61 | 659 | 0 |
EQVIIDNGIVRVTFATPEGHIIGIKYKGIGNVLESDNEYNNRGYWDVVWNKPGAENDFDKLATSHFRLVMQDEDQIEVSFSKTWKPEDYSDTVPLNVDKR YILRNGSSGIYMYTILERLDGWPDVDMDQIRVVFKLQDKLFRYMAISDERQRVMPTVKDRESGQALDYPEAVLLTRPSNPALRGEVDDKYQYSCEDQDNK VHGWISEDRRVGFWMITPSDEFRVGGPVKQDLTSHVGPTVLNMFTSTHYAGKDMNTEYRNGEPWKKVVGPVFVYLNAGRTSKLWRDAKRRMHREVKSWPY DFVKSEDFPSADQRGTVVGQLLHRDRYTNENRLTYAGSAYVGLAMPGEEGSWETDAKGYQFWTRADEQGKFSIDNIRAGTYSFYSWVPGIIGENKYKPNI TIRPGSKIDLGMLVYNPPRNGPTLWEIGIPDRKAAEFYVPDAYPTLMNKLYANRPTERFRQYGLWSRYADKYPKHDLVYEVGVSNFFEDWFYAHVPRRAG NNTYRATTWQIKFDLPKPDRSGDYTLQLALASAANAEIQVRFNDWNTSGKPLFTTGLIGKDNAIARHGIHGLYWLFSISVPCGRIVDGKNSVYLTQTRT |
Full Sequence |
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Protein Sequence Length: 681 Download |
MAQHAEPISH QMESRVTNSS SGLAVQLDRE KDPQRVKLSF PFPFILQEKP EFSTNRFFIY 60 EQVIIDNGIV RVTFATPEGH IIGIKYKGIG NVLESDNEYN NRGYWDVVWN KPGAENDFDK 120 LATSHFRLVM QDEDQIEVSF SKTWKPEDYS DTVPLNVDKR YILRNGSSGI YMYTILERLD 180 GWPDVDMDQI RVVFKLQDKL FRYMAISDER QRVMPTVKDR ESGQALDYPE AVLLTRPSNP 240 ALRGEVDDKY QYSCEDQDNK VHGWISEDRR VGFWMITPSD EFRVGGPVKQ DLTSHVGPTV 300 LNMFTSTHYA GKDMNTEYRN GEPWKKVVGP VFVYLNAGRT SKLWRDAKRR MHREVKSWPY 360 DFVKSEDFPS ADQRGTVVGQ LLHRDRYTNE NRLTYAGSAY VGLAMPGEEG SWETDAKGYQ 420 FWTRADEQGK FSIDNIRAGT YSFYSWVPGI IGENKYKPNI TIRPGSKIDL GMLVYNPPRN 480 GPTLWEIGIP DRKAAEFYVP DAYPTLMNKL YANRPTERFR QYGLWSRYAD KYPKHDLVYE 540 VGVSNFFEDW FYAHVPRRAG NNTYRATTWQ IKFDLPKPDR SGDYTLQLAL ASAANAEIQV 600 RFNDWNTSGK PLFTTGLIGK DNAIARHGIH GLYWLFSISV PCGRIVDGKN SVYLTQTRTD 660 RPFNGVMYDY IRLEGPKWKF * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam09284 | RhgB_N | 0.002 | 161 | 295 | 135 | + Rhamnogalacturonase B, N-terminal. Members of this family are found in prokaryotic Rhamnogalacturonase B, and adopt a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding. | ||
cd10316 | RGL4_M | 8.0e-28 | 373 | 471 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-48 | 485 | 674 | 192 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-69 | 62 | 246 | 187 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 2.0e-69 | 62 | 338 | 283 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 60 | 676 | 59 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 61 | 677 | 55 | 672 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 63 | 676 | 1 | 617 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 62 | 676 | 53 | 667 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 63 | 676 | 2 | 618 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EH792178 | 294 | 347 | 640 | 0 |
JG056917 | 196 | 486 | 681 | 0 |
DY969340 | 324 | 274 | 593 | 0 |
EE260349 | 250 | 427 | 676 | 0 |
JG640880 | 272 | 201 | 466 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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