Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10004600 |
Family | CBM43 |
Protein Properties | Length: 328 Molecular Weight: 33346.2 Isoelectric Point: 4.7597 |
Chromosome | Chromosome/Scaffold: 1170 Start: 108022 End: 109550 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 151 | 233 | 2.3e-34 |
WCIASPSASETALQVALDYACGYGGADCSAIQSGSSCYNPNTVRDHASYAFNAYYQKNPAPTSCAFGGAAQLTSTDPSKGNCH |
Full Sequence |
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Protein Sequence Length: 328 Download |
MGFRLVQSFI VFLLYLLFVS GASVAKAIPE NEYRRLFPSS PMFTTQLDTT GDVPNVNPTG 60 SGTGDVPIVN PTSPGGMTPI EDPVDSPPAS TTIPNTPPSP MPGNPQSKTP TPPTFGTPQP 120 TTPTFGNPQP STPTYGNPQP TTPSTGSGGQ WCIASPSASE TALQVALDYA CGYGGADCSA 180 IQSGSSCYNP NTVRDHASYA FNAYYQKNPA PTSCAFGGAA QLTSTDPSKG NCHFASSKSQ 240 PSMSPPVNPP PTYSSPTGMS PPTPTMPGNG GPPLGFGGPP VGFGPPSTYG VAEPTGLPSS 300 STSLSSSLLI LCSVIGILGS FILPNHL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-22 | 150 | 220 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-38 | 150 | 234 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK94231.1 | 0 | 6 | 327 | 7 | 304 | unknown [Populus trichocarpa] |
EMBL | CBI30817.1 | 0 | 147 | 261 | 31 | 146 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_174231.2 | 0 | 62 | 327 | 33 | 315 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002271903.1 | 0 | 147 | 261 | 126 | 241 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519744.1 | 0 | 28 | 327 | 32 | 282 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.000000000000001 | 142 | 234 | 4 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |