Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10004720 |
Family | CE8 |
Protein Properties | Length: 371 Molecular Weight: 40734.9 Isoelectric Point: 8.0213 |
Chromosome | Chromosome/Scaffold: 2057 Start: 25605 End: 27697 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 66 | 358 | 0 |
ITVDISGSGQFRSVQAAIDSVPENNDENVLIQLSPGVYIEKVVVPATKPYITLEGTAGRHATVVEWHDRAKDPAPNGEQLRTYRTASVTVFANYFTARNI SFKNTAPAPKPGMQGWQAAAFRISGDKAYFVGCGFYGAQDTLCDDAGRHYFKDCYIEGSIDFIFGNGRSMYKDCELHSIAKRFGSIAAQDRKSPDEKTGF AFLNCKVTGTGQLYVGRAMGQYSRIVYSHTYFDDVVAHGGWDDWDHVSNKNKTAYFGVYKCFGPGAEKVRGVSWARELDYDSAHKFLAKSFVN |
Full Sequence |
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Protein Sequence Length: 371 Download |
MASFYPLTFL FLIICCFFLL DNAVSLTSSS SSSTFIAASP APAPAPANYR HGGGHHWVAP 60 VGHRVITVDI SGSGQFRSVQ AAIDSVPENN DENVLIQLSP GVYIEKVVVP ATKPYITLEG 120 TAGRHATVVE WHDRAKDPAP NGEQLRTYRT ASVTVFANYF TARNISFKNT APAPKPGMQG 180 WQAAAFRISG DKAYFVGCGF YGAQDTLCDD AGRHYFKDCY IEGSIDFIFG NGRSMYKDCE 240 LHSIAKRFGS IAAQDRKSPD EKTGFAFLNC KVTGTGQLYV GRAMGQYSRI VYSHTYFDDV 300 VAHGGWDDWD HVSNKNKTAY FGVYKCFGPG AEKVRGVSWA RELDYDSAHK FLAKSFVNGR 360 HWLPLDAFLS * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 3.0e-101 | 65 | 363 | 307 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-105 | 64 | 363 | 302 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 3.0e-116 | 62 | 365 | 305 | + pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-135 | 64 | 365 | 303 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 49 | 367 | 320 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD65006.1 | 0 | 41 | 367 | 18 | 344 | pectinesterase family protein [Brassica oleracea] |
EMBL | CBI31927.1 | 0 | 1 | 367 | 4 | 349 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_199561.1 | 0 | 5 | 367 | 10 | 362 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002266321.1 | 0 | 55 | 367 | 44 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 55 | 363 | 5 | 312 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3.00004e-41 | 66 | 368 | 9 | 313 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 8e-32 | 72 | 363 | 11 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-19 | 75 | 317 | 43 | 311 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 3e-16 | 65 | 243 | 7 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-16 | 65 | 243 | 7 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |