Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10005254 |
Family | PL1 |
Protein Properties | Length: 462 Molecular Weight: 51582.6 Isoelectric Point: 8.801 |
Chromosome | Chromosome/Scaffold: 773 Start: 175620 End: 177384 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 178 | 379 | 0 |
PLWIIFAHDMNIKLNGELLMTGNKTIDGRGANVHIAYGAGITVQFVENVIIHGIRVHHVVPTNGGMIRDSVDHYGLRTQSDGDGISIFGSTNVWIDHVSM SQCTDGLIDAIQGSTAITISNCHFTHHNDAILLGASDSFSGDQFMQITVAYNHFGQGLVQRMPRCRWGFFHVVNNDYTHWRLYAIGGSRHPTIISQGNRF IA |
Full Sequence |
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Protein Sequence Length: 462 Download |
MGRLMFILFF SFATIIPCLR AQDATKIKPQ YDEVWQKRAE QAKRNLMAAY VPNPLDSDDD 60 VSDTPSSNSG SSRKSMSGNE DVGSKEGTMK SKTRRSLKQG KRKYLGPCAT TNPMDACWRC 120 KEDWATNRRQ MAKCALGFGR KTTGGIDGRL YVVTDNSDDD LLNPVPGTLR YAVIQVEPLW 180 IIFAHDMNIK LNGELLMTGN KTIDGRGANV HIAYGAGITV QFVENVIIHG IRVHHVVPTN 240 GGMIRDSVDH YGLRTQSDGD GISIFGSTNV WIDHVSMSQC TDGLIDAIQG STAITISNCH 300 FTHHNDAILL GASDSFSGDQ FMQITVAYNH FGQGLVQRMP RCRWGFFHVV NNDYTHWRLY 360 AIGGSRHPTI ISQGNRFIAP PEKELKQVTK RDYAAESEWR NWIWRSEGDV FMNEAFFIES 420 GQPNLKTRPS KKFMIKPEPG SLATKMTRFA GALECKPNQK C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-5 | 29 | 97 | 69 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 3.0e-24 | 142 | 377 | 248 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-63 | 182 | 377 | 204 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-73 | 186 | 381 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 14 | 461 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 14 | 461 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002306040.1 | 0 | 1 | 461 | 3 | 432 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323835.1 | 0 | 31 | 461 | 28 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 4 | 461 | 9 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 112 | 453 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 112 | 453 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1vbl_A | 0.000000000000002 | 195 | 377 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3zsc_A | 0.000000000000006 | 194 | 437 | 63 | 314 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.0000000000001 | 190 | 385 | 71 | 284 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |