Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10005304 |
Family | GH28 |
Protein Properties | Length: 421 Molecular Weight: 45567.5 Isoelectric Point: 9.7215 |
Chromosome | Chromosome/Scaffold: 1080 Start: 24798 End: 26170 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 79 | 404 | 0 |
EDACRCNKPAAVVVPRGTYMLKPIVFYGPCKSKMMLHVEGKVVGPAHYWDFGKSGFWILFYKLDKFTIHGGIFDAQAADYWKCRQSHSSCPFGTKSISII QSRNVVVKGLTSLNSQMFHIAIDHCHQVLLKKIHIQAPSRSLNTDGIHIQSSEGITISGAVIKTGDDCIAIGPGSKNLKIRGVTCGPGHGISIGSLALHE HEDGVENVMVADSTFIGSQNGVRIKSWGRKTTSFVNNVMFQNILMDNVYNPIIIDQNYCPYNKNCPGMGSGVKITGITYRNIHGTSASPVAVKFICSASR PCTGLRVANVKLTFHKAAATSYCTHA |
Full Sequence |
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Protein Sequence Length: 421 Download |
MEKSSRNFLL ILHLFLFFLE ATVNSSLVVD PFNYSTTSQV SNKKKRAGGV PHVTFNVLHY 60 GAKADGVSDS TPAFSQAWED ACRCNKPAAV VVPRGTYMLK PIVFYGPCKS KMMLHVEGKV 120 VGPAHYWDFG KSGFWILFYK LDKFTIHGGI FDAQAADYWK CRQSHSSCPF GTKSISIIQS 180 RNVVVKGLTS LNSQMFHIAI DHCHQVLLKK IHIQAPSRSL NTDGIHIQSS EGITISGAVI 240 KTGDDCIAIG PGSKNLKIRG VTCGPGHGIS IGSLALHEHE DGVENVMVAD STFIGSQNGV 300 RIKSWGRKTT SFVNNVMFQN ILMDNVYNPI IIDQNYCPYN KNCPGMGSGV KITGITYRNI 360 HGTSASPVAV KFICSASRPC TGLRVANVKL TFHKAAATSY CTHAGGGAAG VVSLKGCFRK 420 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-83 | 54 | 415 | 371 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-89 | 55 | 418 | 373 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-89 | 82 | 409 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-99 | 54 | 404 | 358 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 7.0e-143 | 53 | 420 | 369 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172056.1 | 0 | 1 | 420 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_172057.1 | 0 | 55 | 420 | 28 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002331632.1 | 0 | 52 | 418 | 23 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529094.1 | 0 | 52 | 418 | 23 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529095.1 | 0 | 52 | 418 | 23 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 5e-22 | 89 | 409 | 25 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-22 | 89 | 409 | 25 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-22 | 89 | 409 | 25 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-22 | 89 | 409 | 25 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 5e-22 | 89 | 409 | 25 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |