Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10005978 |
Family | PL4 |
Protein Properties | Length: 626 Molecular Weight: 70555.2 Isoelectric Point: 5.3976 |
Chromosome | Chromosome/Scaffold: 114 Start: 75981 End: 79954 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 6 | 154 | 4.6e-33 |
VKLHIDNNHVVLDNGILKLTISKPQGIVTGITYNGITNLLEVRNDEIDRGYWDLVWSKEGSTGTKGTQERISGTEFSVIVENEGQVEVSFARTWDPSLEG QLPSLNIDKRFILLRNSSGFYSYAIFEHLPEWTPFHLPQVRIVFKLNKD | |||
PL4 | 157 | 600 | 0 |
DPAVGFWQITPSNEFRSGGLVKQNLTSHCGPINLAMFLSAHYAGGDMVLKLKPGEGWKKVLGPVFMYLNTVAADDHGGGKIDPLLSLWEDAKQQMKVEVE SWPYDFPASDDFPKVDQRGRVTGRFLIQDRHSVFIFRSAANSPRLRKLRKKKWLSWEINIDCNIPCGSETTVIPGNGGYVGLAPPGEVGSWQTDGKGYQF WSEADEQGNFSISNIRPGEYNLYAWIPGFIGDYKYDSPITIHPGSDMELGDVVYKPPRDGPTVWEIGFPDRSASGFYVPDANPVYSNKLFLGHPDRFRQY GLWERYTELYPEEDLVYTIGESDWTKDWFFTHIPRKTNEREYEPTTWEIKFGLDNRHSNSGGGGDKYYKLRIALAAANVAELEVRINDPDMEKSALFTTG VIGHDNTIARHGIHGLYRLYSVDVPASLLVQDNTFYFTQTQTKS |
Full Sequence |
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Protein Sequence Length: 626 Download |
MSTLGVKLHI DNNHVVLDNG ILKLTISKPQ GIVTGITYNG ITNLLEVRND EIDRGYWDLV 60 WSKEGSTGTK GTQERISGTE FSVIVENEGQ VEVSFARTWD PSLEGQLPSL NIDKRFILLR 120 NSSGFYSYAI FEHLPEWTPF HLPQVRIVFK LNKDNSDPAV GFWQITPSNE FRSGGLVKQN 180 LTSHCGPINL AMFLSAHYAG GDMVLKLKPG EGWKKVLGPV FMYLNTVAAD DHGGGKIDPL 240 LSLWEDAKQQ MKVEVESWPY DFPASDDFPK VDQRGRVTGR FLIQDRHSVF IFRSAANSPR 300 LRKLRKKKWL SWEINIDCNI PCGSETTVIP GNGGYVGLAP PGEVGSWQTD GKGYQFWSEA 360 DEQGNFSISN IRPGEYNLYA WIPGFIGDYK YDSPITIHPG SDMELGDVVY KPPRDGPTVW 420 EIGFPDRSAS GFYVPDANPV YSNKLFLGHP DRFRQYGLWE RYTELYPEED LVYTIGESDW 480 TKDWFFTHIP RKTNEREYEP TTWEIKFGLD NRHSNSGGGG DKYYKLRIAL AAANVAELEV 540 RINDPDMEKS ALFTTGVIGH DNTIARHGIH GLYRLYSVDV PASLLVQDNT FYFTQTQTKS 600 PSSAPFQGAF QGVMYDYVRL ESPSE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-26 | 273 | 407 | 135 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-34 | 420 | 621 | 205 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 7.0e-46 | 6 | 231 | 283 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-62 | 1 | 157 | 157 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001062465.1 | 0 | 2 | 624 | 13 | 604 | Os08g0554300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_567703.4 | 0 | 6 | 623 | 7 | 639 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002301112.1 | 0 | 17 | 621 | 1 | 612 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301114.1 | 0 | 1 | 623 | 1 | 631 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527357.1 | 0 | 1 | 623 | 1 | 634 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY969340 | 346 | 165 | 509 | 0 |
DY922281 | 329 | 201 | 528 | 0 |
EL409069 | 289 | 329 | 615 | 0 |
FY792769 | 258 | 329 | 586 | 0 |
DV139551 | 291 | 190 | 480 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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