y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10005979 |
Family | PL4 |
Protein Properties | Length: 709 Molecular Weight: 80250.6 Isoelectric Point: 6.1825 |
Chromosome | Chromosome/Scaffold: 114 Start: 80787 End: 85576 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 58 | 683 | 0 |
AVKLQIWDQYVVIGNGIVEVNLTNPGGQVVGVGYNGVVNLLEVVNHENDRGYWDVVWKGDGIVKKKGALDRLECEEMSIITEKEEQVEISFTRKWNSSLE AKPVPLNIDKRFIMRQGSSGFYTYAIYEHLQQHPAFELANTRLVIKPRKDIFHEMALSDKKQREMPLPDDRLPPRGRTLDYPEAVLLVDPIEPQFKGQVD DKYEYSMENRDIKVHGWMSREPSVGLWQITPSSEFRSGGPLKQFLASHVGPTNLAVFHSTHYTGADMMIPFKANEPWKKVYGPVFIYLNSLDSQDHKQPQ QGKITQLSLWEDAKNQSVNQSKQWPYQFVGSQDYALSSQRGSITGKLSVLEPQISYDGNNLLPPLGAFVGLAAPGNPGSWQLESKKYQFWTEVEPDGTFR IDNVIVGRYNLYGFVPNFVGEYKYDAPIDITPGTTVDVGDVVYQPPRNGSTLWEIGIPDRTAAEFFIPDANPDYINPLYLHQEKYRQYGLWERYAELYPE ADLVYNVHTDDYKKDWFFAQVTRKKDSNGTYQGTTWQVKFKLDVTYPQVNYTLRVALATANGAELQVRVNEPSTLIPLFTTGEIGKDNTIARHGIHGVYR LFDVTVPGSLLVEGNNTIFLTQAVGK |
Full Sequence |
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Protein Sequence Length: 709 Download |
MERRRRFDGS CGIPSSSFLL LLLIMWSSSP ARGLNHGEGR SRKPPGVGVG QEPSSFEAVK 60 LQIWDQYVVI GNGIVEVNLT NPGGQVVGVG YNGVVNLLEV VNHENDRGYW DVVWKGDGIV 120 KKKGALDRLE CEEMSIITEK EEQVEISFTR KWNSSLEAKP VPLNIDKRFI MRQGSSGFYT 180 YAIYEHLQQH PAFELANTRL VIKPRKDIFH EMALSDKKQR EMPLPDDRLP PRGRTLDYPE 240 AVLLVDPIEP QFKGQVDDKY EYSMENRDIK VHGWMSREPS VGLWQITPSS EFRSGGPLKQ 300 FLASHVGPTN LAVFHSTHYT GADMMIPFKA NEPWKKVYGP VFIYLNSLDS QDHKQPQQGK 360 ITQLSLWEDA KNQSVNQSKQ WPYQFVGSQD YALSSQRGSI TGKLSVLEPQ ISYDGNNLLP 420 PLGAFVGLAA PGNPGSWQLE SKKYQFWTEV EPDGTFRIDN VIVGRYNLYG FVPNFVGEYK 480 YDAPIDITPG TTVDVGDVVY QPPRNGSTLW EIGIPDRTAA EFFIPDANPD YINPLYLHQE 540 KYRQYGLWER YAELYPEADL VYNVHTDDYK KDWFFAQVTR KKDSNGTYQG TTWQVKFKLD 600 VTYPQVNYTL RVALATANGA ELQVRVNEPS TLIPLFTTGE IGKDNTIARH GIHGVYRLFD 660 VTVPGSLLVE GNNTIFLTQA VGKGPFYGLM YDYIRFEGPL SPNPRDRN* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-19 | 396 | 489 | 94 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-49 | 510 | 697 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-54 | 59 | 352 | 297 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 4.0e-55 | 65 | 256 | 192 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002301113.1 | 0 | 27 | 703 | 27 | 680 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301114.1 | 0 | 59 | 706 | 6 | 638 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527356.1 | 0 | 68 | 699 | 128 | 746 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527356.1 | 6e-39 | 129 | 256 | 1 | 128 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 55 | 699 | 2 | 634 | lyase, putative [Ricinus communis] |