CAZyme Information

Basic Information
SpeciesLinum usitatissimum
Cazyme IDLus10006171
FamilyGH28
Protein PropertiesLength: 612 Molecular Weight: 66689.3 Isoelectric Point: 8.3534
ChromosomeChromosome/Scaffold: 779 Start: 127433 End: 133638
DescriptionMATE efflux family protein
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH284535859.3e-37
  IGKGTFDGLGTAAWDKNDCAKNNNCKNLPFNLRFNFVKQAPIEGVTFKDSKNFNVNVLGCENITFCNFHVGAPEESPNTDGIHMGKSTGVSIIDPTSETG
  YDCISIRDGIKQLRIENVKCGPGHEISIGSLGE
Full Sequence
Protein Sequence     Length: 612     Download
MEGRSSKWVV CLNEVKTVSL VAAPMVVVTV LQFLVQFVAT MMVGHLDQLS LSAASIGAAF    60
SLVTGFTVLA GMAGGLETLC GQAYGAEQYH KLGTYMYSAI TSMTLVCFPI SILWIFTDKF    120
LILAGQDHLI SILARKYSIC LVPGLFGSAM LQAMTRYFQT QSLILPMLFA SLATMCLHVP    180
LCWFLVFKTG LRYLGAALAV SISTWANVIL LVIYMTCSSK CSKTLSKSKF RDLYLGTAEF    240
LRFAIPSAMM TCLEWWSYDL LILLAGLLPN PKLESSVISI CFSITYLHYY IPYGFGATIS    300
TRVSNELGAG KPKAAKMAVQ AVMILAIIEL AVVILPLFLC RHILGYVFSN DKEIVDYVAD    360
MAPFMCLSAT MDTLQSVLSG VVRGSGKQNL GAFVNLGAYY VVGTPLAVVL AFVAHLRGKG    420
LLIGLATGSG LQATMFAVRI FLTDWEQQNE QNIGKGTFDG LGTAAWDKND CAKNNNCKNL    480
PFNLRFNFVK QAPIEGVTFK DSKNFNVNVL GCENITFCNF HVGAPEESPN TDGIHMGKST    540
GVSIIDPTSE TGYDCISIRD GIKQLRIENV KCGPGHEISI GSLGEKPWGR ACCRSVRQKL    600
YLNQHSKWSK D* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam00295Glyco_hydro_285.0e-34454588135+
COG0534NorM6.0e-3814445435+
cd13131MATE_NorM_like6.0e-3914445444+
TIGR00797matE2.0e-4440365330+
cd13132MATE_eukaryotic2.0e-13714448435+
Gene Ontology
GO TermDescription
GO:0004650polygalacturonase activity
GO:0005975carbohydrate metabolic process
GO:0006855drug transmembrane transport
GO:0015238drug transmembrane transporter activity
GO:0015297antiporter activity
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
RefSeqNP_001151913.10845128471LOC100285550 [Zea mays]
RefSeqXP_002314825.10546123481predicted protein [Populus trichocarpa]
RefSeqXP_002458328.10845130473hypothetical protein SORBIDRAFT_03g031420 [Sorghum bicolor]
RefSeqXP_002528064.101344816450TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
RefSeqXP_002532229.10844925465TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3mku_B1e-19134539453A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of Halothermothrix Orenii
PDB3mku_A1e-19134539453A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of Halothermothrix Orenii
PDB3mkt_B1e-19134539453A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter
PDB3mkt_A1e-19134539453A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter
PDB4hun_A0.0000000003104128413A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter
Transmembrane Domains
StartEnd
2039
5274
94116
137154
164186
193215
246268
275297
317339
393415
420442
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
EL435412312944050
DV16120629673020
GW895099289133010
DY296547306123170
DY9714182961184130
Orthologous Group
SpeciesID
Carica papayaevm.model.supercontig_48.193
Malus domesticaMDP0000731047
Manihot esculentacassava4.1_026308mcassava4.1_027361mcassava4.1_033443mcassava4.1_022207mcassava4.1_030899m
Medicago truncatulaMedtr2g100040.1.47.188Medtr2g100040.1.47.188
Panicum virgatumPavirv00028285mPavirv00015111m
Phaseolus vulgarisPhvul.007G076500.1
Vitis viniferaGSVIVT01020329001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny