Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10006241 |
Family | PL1 |
Protein Properties | Length: 388 Molecular Weight: 42929.6 Isoelectric Point: 9.6065 |
Chromosome | Chromosome/Scaffold: 1140 Start: 199103 End: 201086 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 98 | 302 | 0 |
FARDMVIKLKAELMMNSFKTIDGRGYSVHIAGGPCITTQYVTNVIIHGINVHDCKQGGNTYVRDSPTHYGYRTISDGDGISIFGGSHVWIDHVSLSNCND GLIDTIHGSTAITISNCYMTHHNKVMLLGHNDDFTRDKIMQVTIAFNHFGEGLVQRMPRNGYFHVVNDYTRWKMYAIGGSVVNDYTRWQMYAIGGSADPA INSQE |
Full Sequence |
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Protein Sequence Length: 388 Download |
MATKHSLILL HLLLLHFSSY ISSSPVPDPE LVAEEVHRPA TRSTTAGDTT KTGTRTESGS 60 WTVRSGSART RSAAAMASSP TPALRYAAMQ DRPLWILFAR DMVIKLKAEL MMNSFKTIDG 120 RGYSVHIAGG PCITTQYVTN VIIHGINVHD CKQGGNTYVR DSPTHYGYRT ISDGDGISIF 180 GGSHVWIDHV SLSNCNDGLI DTIHGSTAIT ISNCYMTHHN KVMLLGHNDD FTRDKIMQVT 240 IAFNHFGEGL VQRMPRNGYF HVVNDYTRWK MYAIGGSVVN DYTRWQMYAI GGSADPAINS 300 QETGFWVTKY KIAPESEWRK WNWRSQGDLF RNGVFFTTTG EGASLSYVRA SSLGAKRLRS 360 LVRSRPGLGR CLARGVDAAD EGIIRNR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-18 | 114 | 266 | 164 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-48 | 112 | 305 | 205 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-57 | 101 | 301 | 219 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB59066.1 | 0 | 22 | 364 | 27 | 393 | pectate lyase [Salix gilgiana] |
EMBL | CAN76500.1 | 0 | 21 | 367 | 20 | 390 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 21 | 367 | 20 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275781.1 | 0 | 21 | 373 | 75 | 451 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002285340.1 | 0 | 22 | 356 | 21 | 380 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 79 | 341 | 52 | 314 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 79 | 341 | 52 | 314 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.000000000002 | 102 | 266 | 56 | 212 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.00000001 | 105 | 256 | 78 | 244 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.00000001 | 105 | 256 | 78 | 244 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |