Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10006456 |
Family | PL1 |
Protein Properties | Length: 408 Molecular Weight: 44579.5 Isoelectric Point: 8.5579 |
Chromosome | Chromosome/Scaffold: 743 Start: 176449 End: 178183 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 128 | 326 | 0 |
IVFARDMVIKLKAELMMNSFKTIDGRGASVHIAGGPCITIQYVNNIIIHGINVHDCKSGGNLNVRDSPEHFGWRTRSDGDGISIFGGSHVWVDHVSLSNC QDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDGFVRDKIMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWLMYAIGGSASPTINSQGNRFLA |
Full Sequence |
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Protein Sequence Length: 408 Download |
METQLLSLLL LLLTVLQLPS HIASSPVPDP DLVADEVNRI ITNATNSRRN LGFLSCKTGN 60 PIDDCWRCDS SWHKNRKRLA DCSIGFGKNA IGGRDGKFYV VTDSGDHPVN PKPGTLRYGV 120 IRDEPLWIVF ARDMVIKLKA ELMMNSFKTI DGRGASVHIA GGPCITIQYV NNIIIHGINV 180 HDCKSGGNLN VRDSPEHFGW RTRSDGDGIS IFGGSHVWVD HVSLSNCQDG LIDAIHGSTA 240 ITISNNYMTH HNKVMLLGHS DGFVRDKIMQ VTIAFNHFGE GLVQRMPRCR HGYFHVVNND 300 YTHWLMYAIG GSASPTINSQ GNRFLAPNDK FNKEVTKREE AGESEWKKWN WRSEGDLLLN 360 GAFFTRSGAG ASSSYAKASS LGARPSSLVG PLTSGAGSLV CKKGSSC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-20 | 146 | 324 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-53 | 144 | 324 | 190 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-64 | 133 | 328 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU21247.1 | 0 | 19 | 407 | 18 | 406 | unknown [Glycine max] |
DDBJ | BAB59066.1 | 0 | 23 | 407 | 27 | 409 | pectate lyase [Salix gilgiana] |
EMBL | CAN76500.1 | 0 | 19 | 407 | 17 | 403 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 19 | 407 | 17 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285340.1 | 0 | 23 | 407 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 60 | 397 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 60 | 397 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-17 | 128 | 325 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.00000000000002 | 137 | 398 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.00000000000002 | 137 | 398 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |