| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10006780 |
| Family | CBM53 |
| Protein Properties | Length: 1112 Molecular Weight: 126633 Isoelectric Point: 7.0641 |
| Chromosome | Chromosome/Scaffold: 204 Start: 256939 End: 263069 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM53 | 404 | 493 | 4.4e-30 |
| RVRLFYNKSSGPLAHSNDLWIHGGHDNWNGGLSIVQKFAKFERKKDGDWWYTNVVVPDGALVLDWVFADGPPQNAAVYDNNHLQDFHAIV | |||
| CBM53 | 228 | 311 | 3.6e-30 |
| QEVEVFLNRRLSSLVNEPEILVMGAFNDWKWKSFTARLSKTHLREDWWSCCIHVPKEAYKIDFVFFNGRDVYDNNGRKDYCLPV | |||
| CBM53 | 565 | 653 | 9.6e-33 |
| GSDVTVFYNPANTVLNGKSEVWFRGSFNRWTHRKGPLPPQKMLLADDGLHVKTTVRVPLDAYMMDFVFSDKEDGGTFDNRDRMDYHVPV | |||
| GT5 | 664 | 1107 | 0 |
| NIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVNIILPKYDCLKLNHVKDLQFHRSYSWGGTEIKVWLGKVEGVSVYFLEPQNGMFWTGCIYGCRND GERFGFFCHAALEFLLQSGSHPDIIHCHDWSSAPVAWLFKDHYVHYGLSKARIVFTIHNLEFGAQNISKAMAYSDKATTVSPTYATEVAGNGAVAPHLYK FHGILNGIDQDIWDPYNDQFIPVHYTSENVIEGKRAAKEALQERLGLKRADLPLVGIITRLTHQKGIHLIKHAIWRTLERGGQLVLLGSAPDPRIQNDFV GLANLLHSKHGDRARLLLTYDEPLSHLIYAGSDFMLVPSIFEPCGLTQLTAMRYGTIPVVRKTGGLFDTVFDVDDDKERAQSQGIEPNGFNFEGADTPGV DYALNRAISAWYDGRDWFNTLCKTVMEQDWSWNKPALDYMELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1112 Download |
| MEVSLQVQRS LTSCRRASSH DKPRFKITPF SGSGFFSPLR STTHFISLAA WCNEHPSSSG 60 FSLQVTASAE FSGRKGKKLS SGRPKTSAPK GFVPKTSSVW RKEQKQYGNK NDADDRSPDK 120 HVENVKTVQD GSKTARKVTV TETSLPMENG SVGTNESNET SLGETHFDDL VDGEADSTID 180 KAKEEAFLAL KLESEENLRR QEIEVLAEKS FSKGVKMFVY PQVVNPDQEV EVFLNRRLSS 240 LVNEPEILVM GAFNDWKWKS FTARLSKTHL REDWWSCCIH VPKEAYKIDF VFFNGRDVYD 300 NNGRKDYCLP VEGGMDEFAF EDFLLEEKQR ELKRLAEENA EKERRVEEQR RMEAEMAARE 360 ADRLQAKTET EKRRQSLQKV MKRAVRSVEN VWFIEPREFK GLDRVRLFYN KSSGPLAHSN 420 DLWIHGGHDN WNGGLSIVQK FAKFERKKDG DWWYTNVVVP DGALVLDWVF ADGPPQNAAV 480 YDNNHLQDFH AIVPNNIPED VYWVEEEHKL YRKLQEERRG REKALHAKAE KTRRMKAETK 540 ERTLRRFLLS QKHIFYTEPL DVQAGSDVTV FYNPANTVLN GKSEVWFRGS FNRWTHRKGP 600 LPPQKMLLAD DGLHVKTTVR VPLDAYMMDF VFSDKEDGGT FDNRDRMDYH VPVLGGIAKE 660 SPMNIVHIAV EMAPIAKVGG LGDVVTSLSR AVQDLNHNVN IILPKYDCLK LNHVKDLQFH 720 RSYSWGGTEI KVWLGKVEGV SVYFLEPQNG MFWTGCIYGC RNDGERFGFF CHAALEFLLQ 780 SGSHPDIIHC HDWSSAPVAW LFKDHYVHYG LSKARIVFTI HNLEFGAQNI SKAMAYSDKA 840 TTVSPTYATE VAGNGAVAPH LYKFHGILNG IDQDIWDPYN DQFIPVHYTS ENVIEGKRAA 900 KEALQERLGL KRADLPLVGI ITRLTHQKGI HLIKHAIWRT LERGGQLVLL GSAPDPRIQN 960 DFVGLANLLH SKHGDRARLL LTYDEPLSHL IYAGSDFMLV PSIFEPCGLT QLTAMRYGTI 1020 PVVRKTGGLF DTVFDVDDDK ERAQSQGIEP NGFNFEGADT PGVDYALNRA ISAWYDGRDW 1080 FNTLCKTVME QDWSWNKPAL DYMELYHSAR K* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 4.0e-155 | 659 | 1109 | 497 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 9.0e-160 | 663 | 1109 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 4.0e-169 | 663 | 1111 | 486 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-180 | 664 | 1108 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 79 | 1111 | 1041 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF49176.1 | 0 | 1 | 1111 | 1 | 1163 | starch synthase III [Phaseolus vulgaris] |
| EMBL | CAB40374.1 | 0 | 1 | 1111 | 1 | 1145 | Starch synthase isoform SS III [Vigna unguiculata] |
| RefSeq | XP_002269011.1 | 0 | 1 | 1111 | 1 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305571.1 | 0 | 79 | 1111 | 1 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 79 | 1111 | 1 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 663 | 1107 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 663 | 1107 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 663 | 1107 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 663 | 1107 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 663 | 1107 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778003 | 728 | 171 | 898 | 0 |
| HO794758 | 571 | 542 | 1111 | 0 |
| HO651392 | 412 | 701 | 1112 | 0 |
| HO794758 | 119 | 208 | 315 | 0.051 |
| HO794758 | 132 | 369 | 497 | 3 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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