Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10006811 |
Family | CBM43 |
Protein Properties | Length: 511 Molecular Weight: 55964.9 Isoelectric Point: 6.7706 |
Chromosome | Chromosome/Scaffold: 689 Start: 167557 End: 169546 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 396 | 476 | 1.1e-24 |
WCILNPDASNPVGLDDALGYACAYGDCTSLKPGSPCADMSKSGQASYAFNMYYQINDQDVDACDFNGLAALVKTNASRGNC | |||
GH17 | 52 | 373 | 0 |
VGVNWGSITSHPMSPDIVVQMLKDNGFKKLKLFESDSYTVSKFAGTDIEVMLGIPNNQLHDLAKDYDNAKDWVKENVSDHMSNEKDKHVNIKYVAVGNEP FLISYADKYIKDLFPAMQNIQKALNEAGYGNTIKATVPLNADVYESNSNKPSDGNFRSNVKDQMKAIIKFLSQNKAPIVVNIYPFLSLYQSSNFPSSFAF FDENGRKVYDKNVAYSNVFDANYDTLVYALKKNGYPDIKIIVGEVGWPTAGHKYATPEYAEKFYSGLMKKLAGNKGTPLRPGKLDVYLFALMDEDQKSIE PGPFERHWGLFAFDGKPKFPVD |
Full Sequence |
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Protein Sequence Length: 511 Download |
MIRSTRSPLL VAGDYRRDRI CLWATCLLII TITNVAPVFS ATNSSLSVVQ GVGVNWGSIT 60 SHPMSPDIVV QMLKDNGFKK LKLFESDSYT VSKFAGTDIE VMLGIPNNQL HDLAKDYDNA 120 KDWVKENVSD HMSNEKDKHV NIKYVAVGNE PFLISYADKY IKDLFPAMQN IQKALNEAGY 180 GNTIKATVPL NADVYESNSN KPSDGNFRSN VKDQMKAIIK FLSQNKAPIV VNIYPFLSLY 240 QSSNFPSSFA FFDENGRKVY DKNVAYSNVF DANYDTLVYA LKKNGYPDIK IIVGEVGWPT 300 AGHKYATPEY AEKFYSGLMK KLAGNKGTPL RPGKLDVYLF ALMDEDQKSI EPGPFERHWG 360 LFAFDGKPKF PVDLSGKGND KMLVAAKGVQ YLPAQWCILN PDASNPVGLD DALGYACAYG 420 DCTSLKPGSP CADMSKSGQA SYAFNMYYQI NDQDVDACDF NGLAALVKTN ASRGNCLFPV 480 QIVSGGFLIE SGGGVGLVAS ILVLMGLSML * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.002 | 289 | 365 | 81 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 6.0e-17 | 395 | 464 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-28 | 395 | 478 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 7.0e-74 | 52 | 373 | 324 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN62816.1 | 0 | 52 | 486 | 27 | 458 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_201284.1 | 0 | 32 | 485 | 8 | 458 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002275701.1 | 0 | 52 | 486 | 27 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310612.1 | 0 | 17 | 503 | 3 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530257.1 | 0 | 20 | 486 | 7 | 459 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 50 | 375 | 1 | 315 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3ur8_A | 0 | 50 | 375 | 1 | 315 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3ur7_B | 0 | 50 | 375 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 50 | 375 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 50 | 375 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |