| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10007211 |
| Family | GH5 |
| Protein Properties | Length: 846 Molecular Weight: 94360.1 Isoelectric Point: 9.9706 |
| Chromosome | Chromosome/Scaffold: 674 Start: 187235 End: 193594 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH5 | 486 | 805 | 5.3e-30 |
| KNGKSVYLNGFNAYWMIMLAAQESTRGQVTLAFREASRVGMNVARTWAFNDGVGRLQISPGVYDENVFKGLDFVISEAGKFGINVILGLVNNYNDLGGRP QYVAWAKERGQAVSGDDDFYTNPVIRGYYKNHVKTVLTRVNTITKVAYKDDPTIFAWELMNEPRSNDYSGALVQNWVSEMAAYLKSIDACHMLEVGLEGF YGPSKRNLNPNSWLFGTDFLSNNQIPSIDFATIHLYADFWLQNSSKPEIDVYADKFLVSHIQDCNRVIRKPLVLAEFGKSFKLPGYGVAVRDAYYKHIYN SIYKSSSRRGSFAGGIFWQL | |||
| Full Sequence |
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| Protein Sequence Length: 846 Download |
| MALMLSKANR KPLANHSLIQ FLSPLLPSSS FSAAADPPEQ NPLASCLSDV KASLKQREEQ 60 QQKQQGSWNQ PPRKPPSPAP SMTNRVGKAA SNEEIRKILS GYRPQSPATG TGSNSTEQVK 120 PRQQINIQDL FQRNAVAGGD STESICIANN QPFSRRDGFQ KITESLRGMV RDSNGFNARV 180 VNDTSSRAWG RSSSAPLFGN IHGVGGAGEI GRMGGDFEKL YSYTELGNLL KKLRTGSQKQ 240 GQKGGFSLQE LNERLSKVRE QEKAEYNSKP EYKNLRNTLQ TLQSVEQQTK QTKMGPVYNP 300 NILSQLGATP DYMLHPPKEE LVDKYFHPDN MSSQEKMKLE LAKVREEFKM SESDCGSARV 360 QVAQLTTKIK HLSSVLHKKD KHSRKGLQEM VQKRKKLLRY LRRTDWDSFT FVLSKLVLVF 420 TNNSTDTERA SPESMGTLIQ HNIISILVAL LLLTQCGFIQ QTTLAAALTG SCRPSIVKAQ 480 GTRFIKNGKS VYLNGFNAYW MIMLAAQEST RGQVTLAFRE ASRVGMNVAR TWAFNDGVGR 540 LQISPGVYDE NVFKGLDFVI SEAGKFGINV ILGLVNNYND LGGRPQYVAW AKERGQAVSG 600 DDDFYTNPVI RGYYKNHVKT VLTRVNTITK VAYKDDPTIF AWELMNEPRS NDYSGALVQN 660 WVSEMAAYLK SIDACHMLEV GLEGFYGPSK RNLNPNSWLF GTDFLSNNQI PSIDFATIHL 720 YADFWLQNSS KPEIDVYADK FLVSHIQDCN RVIRKPLVLA EFGKSFKLPG YGVAVRDAYY 780 KHIYNSIYKS SSRRGSFAGG IFWQLLNPGM DNYGDGYQVV LQNSPSTASI IAQQSKRLSV 840 LHVVS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR00952 | S15_bact | 4.0e-10 | 337 | 418 | 84 | + ribosomal protein S15, bacterial/organelle. This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13 [Protein synthesis, Ribosomal proteins: synthesis and modification]. | ||
| COG0184 | RpsO | 6.0e-11 | 330 | 416 | 89 | + Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis] | ||
| PRK05626 | rpsO | 8.0e-13 | 331 | 416 | 89 | + 30S ribosomal protein S15; Reviewed | ||
| cd00353 | Ribosomal_S15p_S13e | 1.0e-16 | 343 | 416 | 76 | + Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix. | ||
| COG3934 | COG3934 | 3.0e-22 | 518 | 779 | 268 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003735 | structural constituent of ribosome |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAC08442.1 | 0 | 477 | 841 | 45 | 415 | (1-4)-beta-mannan endohydrolase [Coffea arabica] |
| GenBank | EEC71222.1 | 0 | 476 | 841 | 37 | 409 | hypothetical protein OsI_03157 [Oryza sativa Indica Group] |
| Swiss-Prot | Q0JKM9 | 0 | 476 | 841 | 37 | 409 | MAN1_ORYSJ RecName: Full=Mannan endo-1,4-beta-mannosidase 1; AltName: Full=Beta-mannanase 1; AltName: Full=Endo-beta-1,4-mannanase 1; AltName: Full=OsMAN1; Flags: Precursor |
| RefSeq | XP_002302695.1 | 0 | 448 | 838 | 10 | 400 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515142.1 | 0 | 447 | 841 | 9 | 403 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 475 | 841 | 5 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 5e-40 | 487 | 836 | 23 | 381 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 5e-40 | 487 | 836 | 23 | 381 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 5e-40 | 487 | 836 | 23 | 381 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 5e-40 | 487 | 836 | 23 | 381 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JK974111 | 371 | 476 | 841 | 0 |
| HO794665 | 369 | 476 | 841 | 0 |
| JZ191173 | 303 | 525 | 821 | 0 |
| HO798074 | 351 | 491 | 839 | 0 |
| HO780470 | 341 | 501 | 839 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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