| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10007243 |
| Family | CBM22 |
| Protein Properties | Length: 1138 Molecular Weight: 125388 Isoelectric Point: 6.6195 |
| Chromosome | Chromosome/Scaffold: 338 Start: 242961 End: 247696 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 75 | 211 | 6.9e-28 |
| IIVNHDFSQGLQSWHPNCCDGFVVSSNPNRPGLLPRLVGGYAVVSNRKEWWEGIEQDITARISPGLVYSVSAVVGVSGNIQGSSEVIATLKLEQQGTGIQ YLRVGKTTVSKGQLEMLQGNFCLSTIPDRVVFYIEGP | |||
| CBM22 | 245 | 385 | 1e-30 |
| NIILNSDFSQGLESWHPNHCEGYVVSIDLGHPGGHLANEVGSYAVVSNRKESWQGLEQDITSKISPGLTYLVSAFVGVSRKIQGSAEEEVIATLKCEHQG SATSYLLVGKTSVCKGKWENLEGRFSLSTMPDRVVFYIEGP | |||
| CBM22 | 417 | 554 | 1.3e-34 |
| NLIVNPNFEDGSNNWSGRGGCKIAVQNSAADGKIVPQSGKVFAVATGRTQSWHGIQQEITGRVQRKLAYEVTAIVRIYGNNVTSADVRATLWVQNPDNRE QYIGIANLQAKDSDWVQLQGKFLLNGSPKKIVVYLEGP | |||
| CBM22 | 589 | 732 | 2.3e-39 |
| NILENSNLSDGTNGWFPLGNCSLSVATGSPHVLPPMARESLGVHEPLSGRCIAVTKRTQTWMGPAQMITDKVKLFLTYQIAAWVKIGPTGANSGPQNVNV ALGVDNNWVNGGQVEINDDRWHEIGSSFRIEKQPSKIMVYIQGP | |||
| GH10 | 787 | 1065 | 0 |
| KVRQTQNSFPLGTCISRTNIDNEDYVNFFVKNFNWAVFGNELKWYWTESQQGSLNYKDADDMVELCKSHNIEMRGHCIFWDVDGTVQQWIKSLNKDDLMK AVKNRLTDLLTRYKGKFKHYDVNNEMLHGSFYPDRLGKDIRPYMFKTANQLDPSATLFVNDYHVEDGCDTRSNPERYIEHILNLQEQGAPVGGVGIQGHI DSPVGPVVCSALNNLGILGLPIWFTELDVSSVNEYIRAEDLEMMLREAYAHPSVEGIMLWGFWELFMSRENSHLVDAEG | |||
| Full Sequence |
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| Protein Sequence Length: 1138 Download |
| MRRITVCCFT SQSPKTNRKK TKQIQEAKPS TEDSMEQPQM KKNDIGGAGS SETADDNMGN 60 LNSSINFPEH TERTIIVNHD FSQGLQSWHP NCCDGFVVSS NPNRPGLLPR LVGGYAVVSN 120 RKEWWEGIEQ DITARISPGL VYSVSAVVGV SGNIQGSSEV IATLKLEQQG TGIQYLRVGK 180 TTVSKGQLEM LQGNFCLSTI PDRVVFYIEG PSAGADILVA SVNVCSSGPA VHDVLVEKHR 240 NVSTNIILNS DFSQGLESWH PNHCEGYVVS IDLGHPGGHL ANEVGSYAVV SNRKESWQGL 300 EQDITSKISP GLTYLVSAFV GVSRKIQGSA EEEVIATLKC EHQGSATSYL LVGKTSVCKG 360 KWENLEGRFS LSTMPDRVVF YIEGPSPGAN LLIKSVLIDK SMCERAGHGS SVNEDENLIV 420 NPNFEDGSNN WSGRGGCKIA VQNSAADGKI VPQSGKVFAV ATGRTQSWHG IQQEITGRVQ 480 RKLAYEVTAI VRIYGNNVTS ADVRATLWVQ NPDNREQYIG IANLQAKDSD WVQLQGKFLL 540 NGSPKKIVVY LEGPPPGTDI LVNSFTLKHA QKLPPSPLPI IENPAFGVNI LENSNLSDGT 600 NGWFPLGNCS LSVATGSPHV LPPMARESLG VHEPLSGRCI AVTKRTQTWM GPAQMITDKV 660 KLFLTYQIAA WVKIGPTGAN SGPQNVNVAL GVDNNWVNGG QVEINDDRWH EIGSSFRIEK 720 QPSKIMVYIQ GPAGGTDFMV GGLQIFPVDR VARFKHLRRL TDKIRKRDVT LKFTGADSSS 780 LHGTLVKVRQ TQNSFPLGTC ISRTNIDNED YVNFFVKNFN WAVFGNELKW YWTESQQGSL 840 NYKDADDMVE LCKSHNIEMR GHCIFWDVDG TVQQWIKSLN KDDLMKAVKN RLTDLLTRYK 900 GKFKHYDVNN EMLHGSFYPD RLGKDIRPYM FKTANQLDPS ATLFVNDYHV EDGCDTRSNP 960 ERYIEHILNL QEQGAPVGGV GIQGHIDSPV GPVVCSALNN LGILGLPIWF TELDVSSVNE 1020 YIRAEDLEMM LREAYAHPSV EGIMLWGFWE LFMSRENSHL VDAEGELNEA GRRFLALKKE 1080 WLSHANGHVD EQAGFGFRGF HGTYTVEIVG LSKKVTKTFV VEKGDTPLIV SIDLSNS* 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 2.0e-17 | 245 | 387 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 9.0e-18 | 417 | 558 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 7.0e-34 | 770 | 1048 | 304 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| smart00633 | Glyco_10 | 9.0e-78 | 828 | 1074 | 268 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-79 | 793 | 1078 | 306 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX33301.1 | 0 | 47 | 562 | 9 | 521 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| GenBank | AAX33301.1 | 0 | 235 | 1134 | 20 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| RefSeq | XP_002301133.1 | 0 | 75 | 1134 | 3 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 245 | 752 | 2 | 491 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 416 | 740 | 1 | 309 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 2e-28 | 780 | 1048 | 22 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 2e-28 | 780 | 1048 | 22 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1x_A | 8e-28 | 818 | 1047 | 39 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1w_A | 8e-28 | 818 | 1047 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 2e-27 | 818 | 1047 | 39 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GW865493 | 309 | 689 | 997 | 0 |
| JG219265 | 255 | 475 | 729 | 0 |
| JG219265 | 269 | 304 | 551 | 3e-20 |
| JG219265 | 235 | 157 | 382 | 0.0000000000001 |
| JG219265 | 95 | 656 | 745 | 0.016 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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