Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10008343 |
Family | GH28 |
Protein Properties | Length: 423 Molecular Weight: 46039.6 Isoelectric Point: 10.1461 |
Chromosome | Chromosome/Scaffold: 520 Start: 199331 End: 201686 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 79 | 405 | 0 |
EEACKSTRPASVHVPRGTYMVKPIVFYGPCKSKMMFHVEGKIVGPSHYWQFGKSGFWILFYKLDKLTIYGGTYDAKGSAFWKCRATQSSCPYGTKSISII QSKNVVVKSLRSLNSQMFHIAIDQCHHVLLKQIYIQAPTRSLNTDGIHIQSSEGITISGAIIKTGDDCIAIGPGSKNVRVDGVKCGPGHGISIGSLGEHE HEDGVENVVVRDSSFLRSQNGVRIKSWGRKTTSFVRNVVFENIAMENVQNPIIIDQNYCPNNNKNCPRKGSGVKISGVKYRNIHGSSASRVAVKFICSAS RPCTGLQLRDVKLTYHQASATSYCTHA |
Full Sequence |
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Protein Sequence Length: 423 Download |
MAKSHNTVIF FLFLFFISSQ ASTSPISYFN HHHNKKGGTG GGRNGGTSRV SYVAYNVVKY 60 GAKHDGASDS TAAFSMAWEE ACKSTRPASV HVPRGTYMVK PIVFYGPCKS KMMFHVEGKI 120 VGPSHYWQFG KSGFWILFYK LDKLTIYGGT YDAKGSAFWK CRATQSSCPY GTKSISIIQS 180 KNVVVKSLRS LNSQMFHIAI DQCHHVLLKQ IYIQAPTRSL NTDGIHIQSS EGITISGAII 240 KTGDDCIAIG PGSKNVRVDG VKCGPGHGIS IGSLGEHEHE DGVENVVVRD SSFLRSQNGV 300 RIKSWGRKTT SFVRNVVFEN IAMENVQNPI IIDQNYCPNN NKNCPRKGSG VKISGVKYRN 360 IHGSSASRVA VKFICSASRP CTGLQLRDVK LTYHQASATS YCTHALGGAT GTISPKSCFG 420 RK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-85 | 56 | 416 | 370 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-87 | 82 | 399 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-91 | 57 | 419 | 372 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-101 | 55 | 418 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-145 | 53 | 421 | 370 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172056.1 | 0 | 53 | 421 | 26 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002331632.1 | 0 | 49 | 419 | 20 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 48 | 419 | 20 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529094.1 | 0 | 55 | 419 | 26 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529095.1 | 0 | 51 | 419 | 22 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 3e-22 | 182 | 410 | 114 | 338 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
PDB | 1ib4_A | 3e-22 | 182 | 410 | 114 | 338 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
PDB | 1ia5_A | 3e-22 | 182 | 410 | 114 | 338 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 6e-21 | 72 | 392 | 8 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 6e-21 | 72 | 392 | 8 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |