Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10009009 |
Family | AA7 |
Protein Properties | Length: 532 Molecular Weight: 59546 Isoelectric Point: 8.9914 |
Chromosome | Chromosome/Scaffold: 883 Start: 72822 End: 74417 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 54 | 297 | 0 |
NLRFTTPATPKPFLILTALHESHVQAAVISASKTGIQMKIRSGGHDYEGRSYTSASSTAAPFFILDMCNFRRIQLDFESETAWVECGATLGELYYRIAEQ SPVHAFPAGACPTVGVGGHLIGGGYGAITRKYGLSTDNIVDARVVNASGEILNGRKSMGEDLFWAIRGGGSSFAVVLAYKVKLVRVPEIVTMLGVERTLE ENATDLVYTWQEVGPTADADLFFKFVAEVVRKQTSRGGEKTIKV |
Full Sequence |
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Protein Sequence Length: 532 Download |
MVTLRSPTTD GDAIKETFIS SLFKNSDPSH PIAGAIYTET HPSYSSVLNA YIHNLRFTTP 60 ATPKPFLILT ALHESHVQAA VISASKTGIQ MKIRSGGHDY EGRSYTSASS TAAPFFILDM 120 CNFRRIQLDF ESETAWVECG ATLGELYYRI AEQSPVHAFP AGACPTVGVG GHLIGGGYGA 180 ITRKYGLSTD NIVDARVVNA SGEILNGRKS MGEDLFWAIR GGGSSFAVVL AYKVKLVRVP 240 EIVTMLGVER TLEENATDLV YTWQEVGPTA DADLFFKFVA EVVRKQTSRG GEKTIKVTFK 300 GMYLGRKDKL MSIMGKKFPR LGLSESDCKE MRWIETVPYW MYVPEGTRLE EALLSRRRRP 360 DEKLVYLKMK SDYVENPISK EGLEKIWRKM MELEVVKMGF NPYGGRLSEI SPEATPFPHR 420 AGNLAKIQYQ TSWTEHGPDP ERLHLDSLRD MYDYMAPYVS SSPRSAFVNY IDLDLGTNGH 480 HRKSSYEEAR RYGLSYFKGN FDRLVKIKSR VDPGNVFRSE QSIPISPQPK L* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR00387 | glcD | 0.005 | 184 | 256 | 79 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
COG0277 | GlcD | 1.0e-14 | 77 | 525 | 463 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 3.0e-15 | 466 | 524 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 5.0e-17 | 65 | 206 | 143 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN60572.1 | 0 | 12 | 527 | 26 | 530 | hypothetical protein [Vitis vinifera] |
EMBL | CAN80091.1 | 0 | 12 | 527 | 26 | 530 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270181.1 | 0 | 12 | 527 | 26 | 530 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270585.1 | 0 | 12 | 527 | 26 | 530 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002523152.1 | 0 | 15 | 527 | 9 | 509 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 15 | 527 | 4 | 514 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 6 | 524 | 1 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 6 | 524 | 1 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 13 | 524 | 6 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 13 | 524 | 6 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG063208 | 216 | 1 | 216 | 0 |
HO777438 | 521 | 16 | 525 | 0 |
DY293389 | 403 | 131 | 525 | 0 |
DY262774 | 384 | 136 | 518 | 0 |
JG063208 | 61 | 423 | 483 | 3e-33 |
Sequence Alignments (This image is cropped. Click for full image.) |
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