y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10009218 |
Family | GH1 |
Protein Properties | Length: 1937 Molecular Weight: 216906 Isoelectric Point: 6.2675 |
Chromosome | Chromosome/Scaffold: 267 Start: 8558 End: 19471 |
Description | Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH1 | 1449 | 1928 | 0 |
RAHFPDGFIFGTASSAYQFEGAATEGNKGASIWDTFTRKPGSSSPGRILDFSNADVAVDQYHRFQDDIGLMKDLGMDTYRFSISWARIFPNGTGNLNPEG ITYYNKLIDGLLEKGIKPYVTLYHWDLPQMLQDKYGGWLDKKIIEDFEHYANTCFKAFGDRVKNWITFNEPHNFAIQSYDFGIQAPGRCSIIGHLFCKEG NSSAEPYIVAHHILSSHAAAYHSYQSYFKGKQGRIGIVLDAKWFEPKSDADEDKDAANRAMDFTLGWFLDPIFVGRYPLSMRKLAGERLPEISSEMAKLI TGSVDFVGLNHYTTSYVRNDRSRFQKLILQDASTDSAVITSSYRNGIAIGEKAASSWLRIVPWGIRKLMNYVKDKYGNPLVIITENGMDDPNSPFIPREK ALQDEKRIEYHRDYLSNLSASIREDGCNVGGYFIWSLLDNWEWNSGYTVRFGLYYVDYSHNLTRIPKASVNWFKSMLRSQ |
Full Sequence |
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Protein Sequence Length: 1937 Download |
MGNVEIPKWL QGLPLAPEFR PTDTEFADPI AYISKIEKEA GAFGMCKIIP PLPKPSKKYV 60 FSNLNKTLAK SPELGDNCSS LKSGSGVDGK DGDMRAVFTT RHQELGQSIK KKGVEKETPQ 120 MVFHKQVWQS GEVYTLEQFE SKSKAFAKSM LGSVKEVSPL VIEALFWKAA FEKPIYVEYA 180 NDVPGSAFGE PEGQFRYFNR RRRRRASYQS YRRHGEGYNC QNNELIAVDN NAADEVVDAS 240 IKSDPSPSSL STSSTALSSK FVKSYNQKGE SSSCDVEGTA GWKLSNSPWN LQMIARSPGS 300 LTRYMPDDIP GVTSPMVYIG MLYSWFAWHV EDHELHSMNF LHTGSPKTWY SVPGDYAFAF 360 EEIIRRQAYG GKLDRLASLS RLGEKTTLLS PEVVVSSGIP CCRVIQNPGE VVVTFPRAYH 420 VGFSHGFNCG EAANFSTPQW LEVAKEAAVR RAAMNYLPML SHQQLLYLLT MSFVLRVPRS 480 LLPGARSSRL RDRQKEEREL SVKRAFIEDL LRENNTLRAI LRKGPGCKAV IWNPDLLPRA 540 SKQSQLIDTC TAATRMEEDL CHTRLEHENN STSNLFTEMS KYVESLNDLY ADGGDISCDF 600 QVDSGSLVCI ACGILGFPFM SVVQPSEKAA EESLYVDNTF RRVHSSADCN DDPHSVPDQT 660 PALKDLKVPT GWDISNKFLR PRIFCLEHGL QICELLQSRG GANMLVMCHS DFQKMKAYAT 720 SISEEINVPF DYTHIPLESA LNEDLNLIDL AIDGHDWDGR GEDWTSKMGV NLLHCVKIRK 780 KSPSTHVHHA LALAGLFTEG SLSSEFSTLK WESRRSRSRN KLNHSASFSG GKFESKKDDM 840 PEKVSDGVAR KEEKLLCYTR RKSKNKEDCS INGGQDQLYL IRQTSKVSRN SKVGINSLED 900 LGVNPDGVSE NHNEVQFHEA TATTTAVVNS GPSVDTTCSA VMSDPEAFSN SEMRNGIIAA 960 LESSERGLNS NVATDNGLLV ICKDDTENVI TYDRASKRGL NLQVDRDGLV SETSDVANSP 1020 SAEAELVVAE TCCTKREACN HVTSQSEQQE EGQKLPNSNY VISSNETVTT ETITLNGEAC 1080 EQLQDISLVE DAMQKQTEYC DDREEMMQSK LQSEEEPDLG PLDGSGSSES VREQIDLPVT 1140 TQELASSSTS EMEDQPIPET MEACCEPCAT SRTDEDSSAF KNSDGEVEPV NNSVDGMPEC 1200 FEIRTGSEMD EESSAVRSAV EENRSSPPHG HGSIESASSG SIHVKVRKRR RELDQITEDN 1260 LNFKSFVRSP CERLRPRRMG RDDPSTSGAD LEKIPVENAV AKRSRSKRPS NDPVNSQLKK 1320 KQVTKRPHKC EIEGCGMRFE TKEDLVLHSR NRCPYEGCRK KFSSHRYALI HQRVHDDDRP 1380 LKCPWKGCKM AFKWAWARTE HIRVHTGEKP YHCKVDGCGL AFSPLIIIII IIYHLATILH 1440 LVSSDSISRA HFPDGFIFGT ASSAYQFEGA ATEGNKGASI WDTFTRKPGS SSPGRILDFS 1500 NADVAVDQYH RFQDDIGLMK DLGMDTYRFS ISWARIFPNG TGNLNPEGIT YYNKLIDGLL 1560 EKGIKPYVTL YHWDLPQMLQ DKYGGWLDKK IIEDFEHYAN TCFKAFGDRV KNWITFNEPH 1620 NFAIQSYDFG IQAPGRCSII GHLFCKEGNS SAEPYIVAHH ILSSHAAAYH SYQSYFKGKQ 1680 GRIGIVLDAK WFEPKSDADE DKDAANRAMD FTLGWFLDPI FVGRYPLSMR KLAGERLPEI 1740 SSEMAKLITG SVDFVGLNHY TTSYVRNDRS RFQKLILQDA STDSAVITSS YRNGIAIGEK 1800 AASSWLRIVP WGIRKLMNYV KDKYGNPLVI ITENGMDDPN SPFIPREKAL QDEKRIEYHR 1860 DYLSNLSASI REDGCNVGGY FIWSLLDNWE WNSGYTVRFG LYYVDYSHNL TRIPKASVNW 1920 FKSMLRSQST ELDSQS* 1980 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02849 | PLN02849 | 4.0e-121 | 1444 | 1935 | 498 | + beta-glucosidase | ||
PLN02814 | PLN02814 | 3.0e-123 | 1435 | 1925 | 493 | + beta-glucosidase | ||
COG2723 | BglB | 2.0e-136 | 1452 | 1935 | 489 | + Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism] | ||
TIGR03356 | BGL | 6.0e-148 | 1453 | 1921 | 471 | + beta-galactosidase. | ||
pfam00232 | Glyco_hydro_1 | 7.0e-172 | 1452 | 1927 | 485 | + Glycosyl hydrolase family 1. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005515 | protein binding |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_196044.2 | 0 | 1 | 865 | 1 | 834 | ELF6 (EARLY FLOWERING 6); transcription factor [Arabidopsis thaliana] |
RefSeq | NP_196044.2 | 3.9937e-43 | 1248 | 1422 | 1146 | 1322 | ELF6 (EARLY FLOWERING 6); transcription factor [Arabidopsis thaliana] |
RefSeq | XP_002273747.1 | 0 | 1 | 1422 | 1 | 1393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002531686.1 | 0 | 1 | 921 | 3 | 937 | conserved hypothetical protein [Ricinus communis] |
RefSeq | XP_002531686.1 | 0 | 1245 | 1422 | 1361 | 1533 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gnr_A | 0 | 1443 | 1927 | 8 | 488 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |
PDB | 3gnp_A | 0 | 1443 | 1927 | 8 | 488 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |
PDB | 3gno_A | 0 | 1443 | 1927 | 8 | 488 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
PDB | 2rgm_B | 0 | 1447 | 1926 | 15 | 480 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
PDB | 2rgm_A | 0 | 1447 | 1926 | 15 | 480 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY960855 | 306 | 1435 | 1739 | 0 |
HO777739 | 433 | 1494 | 1924 | 0 |
HO794849 | 479 | 1446 | 1916 | 0 |
HO794963 | 425 | 1502 | 1924 | 0 |
GO843301 | 334 | 1416 | 1743 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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