Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10009972 |
Family | GH28 |
Protein Properties | Length: 333 Molecular Weight: 36550 Isoelectric Point: 4.6399 |
Chromosome | Chromosome/Scaffold: 1630 Start: 49056 End: 50230 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 7 | 282 | 0 |
GSNLIDVIITGNNGTIDGQGDVWWNWFHNKTLNYTRPHLVELINSTDVIISNLTFQNSPFWTIHPVYCSQVIVQNVTILAPLDSPNTDGVDPDSSDDVCI EDCYISTGDDLIAIKSGWDEYGTSFGRPSKNITIIRLVGRSQSSAGIAIGSEMSGGVSEVYAEDLHFFGTNSAIRIKTSPGRGGYVRNIHISNMTLTDVN LTIRLTGQYGEHPDESYDPSALPSIEKITIENVSGVNITHAGVLEGIEGDPFLDICLLNITLISVASKPAWECTHI |
Full Sequence |
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Protein Sequence Length: 333 Download |
MKMLFDGSNL IDVIITGNNG TIDGQGDVWW NWFHNKTLNY TRPHLVELIN STDVIISNLT 60 FQNSPFWTIH PVYCSQVIVQ NVTILAPLDS PNTDGVDPDS SDDVCIEDCY ISTGDDLIAI 120 KSGWDEYGTS FGRPSKNITI IRLVGRSQSS AGIAIGSEMS GGVSEVYAED LHFFGTNSAI 180 RIKTSPGRGG YVRNIHISNM TLTDVNLTIR LTGQYGEHPD ESYDPSALPS IEKITIENVS 240 GVNITHAGVL EGIEGDPFLD ICLLNITLIS VASKPAWECT HIAGYSDKVT PKTCKLLREE 300 IFPDHSSDCY HVSSQIQNTS SLSRGKKQWF SW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-22 | 13 | 268 | 275 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 7.0e-23 | 3 | 249 | 254 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 5.0e-26 | 11 | 291 | 292 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-33 | 11 | 242 | 241 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-43 | 7 | 202 | 204 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU18828.1 | 0 | 2 | 326 | 138 | 460 | unknown [Glycine max] |
EMBL | CBI37055.1 | 0 | 2 | 332 | 138 | 466 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 2 | 332 | 189 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 2 | 310 | 138 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 2 | 325 | 148 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3e-36 | 39 | 273 | 186 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3e-36 | 39 | 273 | 186 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3e-36 | 39 | 273 | 186 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3e-36 | 39 | 273 | 186 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-18 | 20 | 270 | 117 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY402823 | 261 | 2 | 262 | 0 |
DT755691 | 262 | 21 | 282 | 0 |
EX074033 | 285 | 39 | 320 | 0 |
DT761634 | 257 | 38 | 294 | 0 |
CO722959 | 222 | 16 | 237 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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