Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10009997 |
Family | CE8 |
Protein Properties | Length: 352 Molecular Weight: 39032.6 Isoelectric Point: 8.4291 |
Chromosome | Chromosome/Scaffold: 1630 Start: 190905 End: 193150 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 52 | 338 | 0 |
SVGRNEDFHSIKDALATIPPRNTRRVVILLKPGVYREKIAIPKTLPFITFLGDSTDPPTITGNDTASVPGNDGMPLRTFQSATVAIDADYFVAVNIKFEN TAAHVIGIRGEQGVAIRVSGTKAAFYNCSFHGSQDTLYDHKGLHYFNNCLIQGSVDFIFGSAISLYENCELNSTSKKVASITAQKRMNFSMPGGFSFKKC SITGSGRIYLGRAWGDYSRVVFSYTYMDQLVLPQGWNDWGNADRDRRVFYGEYKCSGPGANMTGRVPWARNLTDEEAQPFLGAYYID |
Full Sequence |
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Protein Sequence Length: 352 Download |
MAAPMVLFHV QVTQILFMIF ILVLVPVAST FGSGTTLDEK LRRAEMNKIT ISVGRNEDFH 60 SIKDALATIP PRNTRRVVIL LKPGVYREKI AIPKTLPFIT FLGDSTDPPT ITGNDTASVP 120 GNDGMPLRTF QSATVAIDAD YFVAVNIKFE NTAAHVIGIR GEQGVAIRVS GTKAAFYNCS 180 FHGSQDTLYD HKGLHYFNNC LIQGSVDFIF GSAISLYENC ELNSTSKKVA SITAQKRMNF 240 SMPGGFSFKK CSITGSGRIY LGRAWGDYSR VVFSYTYMDQ LVLPQGWNDW GNADRDRRVF 300 YGEYKCSGPG ANMTGRVPWA RNLTDEEAQP FLGAYYIDGD KWLIDPLTYF H* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-103 | 58 | 343 | 286 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 6.0e-104 | 8 | 343 | 350 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 8.0e-107 | 51 | 343 | 297 | + pectinesterase | ||
PLN02665 | PLN02665 | 8.0e-124 | 35 | 346 | 317 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 4.0e-136 | 50 | 343 | 298 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF22736.1 | 0 | 33 | 348 | 57 | 381 | pectinesterase family protein [Brachypodium distachyon] |
EMBL | CAN63186.1 | 0 | 36 | 343 | 62 | 377 | hypothetical protein [Vitis vinifera] |
EMBL | CAN79461.1 | 0 | 32 | 346 | 65 | 381 | hypothetical protein [Vitis vinifera] |
EMBL | CBI27989.1 | 0 | 43 | 343 | 3 | 311 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002320279.1 | 0 | 58 | 343 | 2 | 287 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 49 | 343 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.99965e-42 | 58 | 343 | 14 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-21 | 44 | 331 | 29 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 7e-20 | 49 | 331 | 8 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 7e-20 | 49 | 331 | 8 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |