Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10010470 |
Family | CE8 |
Protein Properties | Length: 414 Molecular Weight: 45270.2 Isoelectric Point: 8.0775 |
Chromosome | Chromosome/Scaffold: 910 Start: 287393 End: 289444 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 111 | 403 | 0 |
ICVDRNGCCNFTTVQAAVDSVPIMSFKRNVIWINSGIYYEKVTVPRNKPNITFQGQGYTSTAIVWNDTAKSANGTFYCASVQVFSDRFIANNISFMNVAP IPGPGDVGAQAVATRVAGDQAVFSNCGFFGAQDTLHDDKGRHLYKDCYIQGSIDFIFGNARSLYQNCQLISMANPVAPGFRSINGAVTAHGRASKEENTG FVFVNCSLGGTGRIWLGRAWRPFSRVVFAYTTMTDIVAPEGWNDFNDPSRDQTIFYGEYNCSGPGAATNQRAPYVQRLNDTLAAPFLDLPFID |
Full Sequence |
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Protein Sequence Length: 414 Download |
MANFKFQNVS LAVLVAVFAF LASTVFVANS NISDGKFPLA TTNLKELVLN QLVQIVNSVT 60 SFDRFFLPAI TRRWRKHRPA DKGGKGKPVV NICDDFPPDI PPPDTSTTTT ICVDRNGCCN 120 FTTVQAAVDS VPIMSFKRNV IWINSGIYYE KVTVPRNKPN ITFQGQGYTS TAIVWNDTAK 180 SANGTFYCAS VQVFSDRFIA NNISFMNVAP IPGPGDVGAQ AVATRVAGDQ AVFSNCGFFG 240 AQDTLHDDKG RHLYKDCYIQ GSIDFIFGNA RSLYQNCQLI SMANPVAPGF RSINGAVTAH 300 GRASKEENTG FVFVNCSLGG TGRIWLGRAW RPFSRVVFAY TTMTDIVAPE GWNDFNDPSR 360 DQTIFYGEYN CSGPGAATNQ RAPYVQRLND TLAAPFLDLP FIDGDQWLPS LLT* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 3.0e-97 | 111 | 408 | 306 | + pectinesterase | ||
PLN02634 | PLN02634 | 3.0e-103 | 111 | 408 | 305 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-116 | 111 | 408 | 299 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 7.0e-124 | 111 | 409 | 306 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 77 | 410 | 334 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB71446.1 | 0 | 87 | 408 | 67 | 386 | Similar to Prunus pectinesterase (gb |
GenBank | ABN08648.1 | 0 | 81 | 408 | 64 | 387 | Pectinesterase [Medicago truncatula] |
RefSeq | NP_172023.1 | 0 | 87 | 408 | 67 | 388 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002323171.1 | 0 | 48 | 412 | 13 | 379 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521065.1 | 0 | 85 | 410 | 69 | 393 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 111 | 410 | 9 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2.00386e-43 | 113 | 410 | 7 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 3e-17 | 120 | 380 | 43 | 339 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 2e-16 | 121 | 411 | 18 | 341 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-16 | 121 | 411 | 18 | 341 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |