Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10010584 |
Family | GH28 |
Protein Properties | Length: 420 Molecular Weight: 45363.3 Isoelectric Point: 9.7945 |
Chromosome | Chromosome/Scaffold: 469 Start: 194934 End: 196280 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 78 | 403 | 0 |
EDACRSNRPAAVVVPRGTYMLKPIVFYGPCKSKMMLRVEGKVVGPAHYWDFGKSGFWILFYKLDKFTIHGGIFDAQAADYWKCRQSHSSCPFGTKSISII QSRNVVVKGLTSLNSQMFHIAIDHCHQVLLKKIHIQAPSRSLNTDGIHIQSSEGITISGAVIKTGDDCIAIGPGSKNLKIRGVKCGPGHGISIGSLALHE HEDGVENVLVTDSTFIGSQNGVRIKSWGRKTTSFVNNVMFQNILMDNVYNPIIIDQNYCPYNKNCPGMGSGVKITGITYRNIHGTSASPVAVKFICSASR PCTGLRVANVKLTYHKAAATSYCTHA |
Full Sequence |
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Protein Sequence Length: 420 Download |
MEKISGNLLL ILHLFLFFLE ATANSSLLVD PFNNSTSQVS NKKKRAGGVP HVTFNVLHYG 60 AKADGVSDST PAFSQAWEDA CRSNRPAAVV VPRGTYMLKP IVFYGPCKSK MMLRVEGKVV 120 GPAHYWDFGK SGFWILFYKL DKFTIHGGIF DAQAADYWKC RQSHSSCPFG TKSISIIQSR 180 NVVVKGLTSL NSQMFHIAID HCHQVLLKKI HIQAPSRSLN TDGIHIQSSE GITISGAVIK 240 TGDDCIAIGP GSKNLKIRGV KCGPGHGISI GSLALHEHED GVENVLVTDS TFIGSQNGVR 300 IKSWGRKTTS FVNNVMFQNI LMDNVYNPII IDQNYCPYNK NCPGMGSGVK ITGITYRNIH 360 GTSASPVAVK FICSASRPCT GLRVANVKLT YHKAAATSYC THAGGGAAGV VSLKGCFHK* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-83 | 53 | 414 | 371 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-90 | 54 | 417 | 372 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-90 | 81 | 408 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-100 | 53 | 403 | 358 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-144 | 52 | 419 | 369 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172057.1 | 0 | 54 | 419 | 28 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002331632.1 | 0 | 51 | 417 | 23 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 53 | 417 | 26 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529094.1 | 0 | 54 | 417 | 26 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529095.1 | 0 | 51 | 417 | 23 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 2e-21 | 80 | 408 | 17 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-21 | 80 | 408 | 17 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-21 | 80 | 408 | 17 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-21 | 80 | 408 | 17 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 2e-21 | 80 | 408 | 17 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |