Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10010738 |
Family | PL4 |
Protein Properties | Length: 419 Molecular Weight: 47555.8 Isoelectric Point: 5.949 |
Chromosome | Chromosome/Scaffold: 94 Start: 299581 End: 301955 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 15 | 184 | 0 |
DDRRAGTPLAYKEAVKLTNPVSNSTWKDQVDDKYEYTVEKKDLKLKGWISDGSKIGFWILAPSDEYMNGGPKKNDLTCHCGPTCIVVFTSIHTFGLDLVT EYRNGEPWKKVFGPVMIYLNSDGDRATLWQNAKSQLEKEVQMWPYDFVQHEDYLPATKRGTVSGQLFVDD | |||
PL4 | 186 | 385 | 0 |
YVPGVVGSFRYSQLITVKEGDDIKLGRIIFESPRSGPTLWQIGIPDRSANDFFIPDPNPRYRQYGLWDRYAELYPTNDVVFEVGKSYYKTDWFFAHVLRG DGQMFNPTVWKIVFDLGEVGPREGNYTLQIALAAAEMTNIYIYVNDLNATMPHYATGTVGTDNAIARHGNHGLYRFFSGNLPSNLFIKGKNTIFMRQAKS |
Full Sequence |
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Protein Sequence Length: 419 Download |
MAVTDEIQLV MPTEDDRRAG TPLAYKEAVK LTNPVSNSTW KDQVDDKYEY TVEKKDLKLK 60 GWISDGSKIG FWILAPSDEY MNGGPKKNDL TCHCGPTCIV VFTSIHTFGL DLVTEYRNGE 120 PWKKVFGPVM IYLNSDGDRA TLWQNAKSQL EKEVQMWPYD FVQHEDYLPA TKRGTVSGQL 180 FVDDNYVPGV VGSFRYSQLI TVKEGDDIKL GRIIFESPRS GPTLWQIGIP DRSANDFFIP 240 DPNPRYRQYG LWDRYAELYP TNDVVFEVGK SYYKTDWFFA HVLRGDGQMF NPTVWKIVFD 300 LGEVGPREGN YTLQIALAAA EMTNIYIYVN DLNATMPHYA TGTVGTDNAI ARHGNHGLYR 360 FFSGNLPSNL FIKGKNTIFM RQAKSTPYAF AGVMYDYIRF EEPQNVPTKS TLTSPTPR* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06045 | Rhamnogal_lyase | 1.0e-8 | 1 | 44 | 46 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 5.0e-29 | 16 | 142 | 127 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-42 | 225 | 401 | 178 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD94618.1 | 0 | 1 | 403 | 33 | 507 | LG127/30 like gene [Arabidopsis thaliana] |
EMBL | CAB37543.1 | 0 | 1 | 403 | 172 | 646 | LG127/30 like gene [Arabidopsis thaliana] |
RefSeq | NP_195516.2 | 0 | 1 | 403 | 190 | 664 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002319997.1 | 0 | 1 | 403 | 142 | 617 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527245.1 | 0 | 1 | 403 | 143 | 618 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG075000 | 236 | 186 | 407 | 0 |
JG104636 | 162 | 242 | 403 | 0 |
FD571429 | 231 | 186 | 399 | 0 |
GO843500 | 244 | 186 | 416 | 0 |
EX909126 | 233 | 189 | 404 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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