Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10010739 |
Family | PL4 |
Protein Properties | Length: 296 Molecular Weight: 33248.6 Isoelectric Point: 8.7253 |
Chromosome | Chromosome/Scaffold: 94 Start: 302559 End: 306059 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 26 | 269 | 0 |
NVHGYNFWTEADEKGNFVIKNIRPGEYNLYSYVPGIVGSFRHSQPITVKEGDDIKLGQLTFKSPRSGPTLWEIGIPDRSANEFFVPDPDPQFVNKFFLDK PNDKYRQYGLWARYAELYPKDDLVFEVGKSDYKKDWFFAHVLRGDGHTYNPTTWKIIFDLPEVSPTGNYTLQIALAAAETTNTFVYVNDINAKRPHYATG TVGTDNAIARHGNHGLYRFFSGGLPSNLFVKGKNTIFMRQAKST |
Full Sequence |
---|
Protein Sequence Length: 296 Download |
MLRVFGHLPA GTVAPPPTGV KLTSDNVHGY NFWTEADEKG NFVIKNIRPG EYNLYSYVPG 60 IVGSFRHSQP ITVKEGDDIK LGQLTFKSPR SGPTLWEIGI PDRSANEFFV PDPDPQFVNK 120 FFLDKPNDKY RQYGLWARYA ELYPKDDLVF EVGKSDYKKD WFFAHVLRGD GHTYNPTTWK 180 IIFDLPEVSP TGNYTLQIAL AAAETTNTFV YVNDINAKRP HYATGTVGTD NAIARHGNHG 240 LYRFFSGGLP SNLFVKGKNT IFMRQAKSTS YMFAGVMYDY IRLEGPCPDP LPKAP* 300 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-17 | 29 | 84 | 56 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 9.0e-48 | 96 | 284 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL15345.1 | 0 | 16 | 286 | 208 | 480 | AT4g24430/T22A6_260 [Arabidopsis thaliana] |
GenBank | AAU90065.1 | 0 | 16 | 286 | 208 | 480 | At4g24430 [Arabidopsis thaliana] |
RefSeq | XP_002319997.1 | 0 | 17 | 286 | 347 | 617 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002445711.1 | 0 | 26 | 287 | 400 | 661 | hypothetical protein SORBIDRAFT_07g024560 [Sorghum bicolor] |
RefSeq | XP_002527245.1 | 0 | 13 | 287 | 346 | 619 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
JG075000 | 259 | 33 | 290 | 0 |
GR312932 | 263 | 29 | 287 | 0 |
GO843500 | 254 | 35 | 287 | 0 |
GO850736 | 253 | 36 | 287 | 0 |
EE260349 | 261 | 28 | 287 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|