| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10010951 |
| Family | CBM57 |
| Protein Properties | Length: 907 Molecular Weight: 100656 Isoelectric Point: 9.039 |
| Chromosome | Chromosome/Scaffold: 286 Start: 306759 End: 311725 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM57 | 468 | 637 | 1.2e-33 |
| HINCGGKEMNLNNTFYDADREPRGASMYYSSQNWAFSSTGHFVDNDLDADTYIQYNNSAISTTTNLSANNNSELYTTARGSPISLTYYGLCLGNGNYTVR LHFAEIVFTNDSSFIGVGKRIFDVYVQDKLVLKDFNIEAEAGGPGRPIVKTYTVAITNNTLKVHFYWAGR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 907 Download |
| MIADLDGGVL SLSIIIIICF ISFPSIISAD IDSNYKLHPS EVKALRDIGK KLGKKGWDFG 60 EDPCSEEGSW DVKDSRKGFE NSVICDCPIS ASASAVAVHG SLNLSNSTTS GSTCHVTSIL 120 FKSQNLSGTL PPEFSRLRYL KKLELSKNIL TGTIPPQWAT LRLVELYLMG NRLSGAFPKV 180 LTNMTTLRNL SIEANEFSGP LPPEIGRMIN IERLHINSNA FTGKLPLQLS KLVNLTDIRI 240 SDNNFSGKIP DFISKLTKLE KLHIQGCPME GPIPSSISAL TSLTDLRITD LKGRGSSFPP 300 LSTMESMKTL VLRNILLSGK IPEYLIKMKK LKTLDLSFNC LSGEIPESFV LLAKVDIIYF 360 TGNRLRGSVP QWILERNKIV YVYLLGISAF YWNFFFLRRL MNRLFMRSDV SYNNFTWESS 420 SPTECPRGSV NLVESYSSST TKQSRIHPCL RQKFPCCLSR KQYRYRLHIN CGGKEMNLNN 480 TFYDADREPR GASMYYSSQN WAFSSTGHFV DNDLDADTYI QYNNSAISTT TNLSANNNSE 540 LYTTARGSPI SLTYYGLCLG NGNYTVRLHF AEIVFTNDSS FIGVGKRIFD VYVQDKLVLK 600 DFNIEAEAGG PGRPIVKTYT VAITNNTLKV HFYWAGRGTT GIPVRGVYGP LISAISVDPN 660 FTPPSPEDSR RHIIIIAGAV SGALSFVLLI LGILWKKGLL GGQAAEEKEL RGLLDQQTGL 720 FALRQIKAAT KNFDPANKLG EGGFGCVYKV VRELHGELPD GTVIAVKQLS SKSKQGNREF 780 VTEVGMISGI QHPNMVKLYG CCVEGNQLIL IYEYMENNCL SRALFAKDPA SRLKLDWPSR 840 QKICIGVARG LAYLHEESRI RVVHRDIKTS NVLLDKDLNP KISDFGLAKL HEDEDTHIST 900 RVAGTM* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07714 | Pkinase_Tyr | 2.0e-36 | 738 | 900 | 164 | + Protein tyrosine kinase. | ||
| smart00221 | STYKc | 9.0e-37 | 738 | 895 | 159 | + Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. | ||
| smart00219 | TyrKc | 3.0e-37 | 738 | 897 | 161 | + Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily. | ||
| cd00192 | PTKc | 4.0e-39 | 737 | 901 | 172 | + Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. | ||
| pfam11721 | Malectin | 4.0e-57 | 467 | 655 | 194 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004672 | protein kinase activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN60698.1 | 0 | 159 | 906 | 81 | 799 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_172244.2 | 0 | 14 | 906 | 10 | 845 | leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002278131.1 | 0 | 36 | 906 | 24 | 836 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002306015.1 | 0 | 42 | 906 | 1 | 809 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532988.1 | 0 | 121 | 906 | 7 | 751 | conserved hypothetical protein [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ulz_A | 1.4013e-45 | 717 | 906 | 16 | 199 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
| PDB | 3uim_A | 1.4013e-45 | 717 | 906 | 16 | 199 | A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation |
| PDB | 3tl8_H | 1.4013e-45 | 717 | 906 | 24 | 207 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3tl8_G | 1.4013e-45 | 717 | 906 | 24 | 207 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3tl8_D | 1.4013e-45 | 717 | 906 | 24 | 207 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
