Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10011400 |
Family | PL1 |
Protein Properties | Length: 407 Molecular Weight: 44517.4 Isoelectric Point: 8.5587 |
Chromosome | Chromosome/Scaffold: 744 Start: 354685 End: 356452 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 127 | 325 | 0 |
IVFARDMVIKLKAELMMNSFKTIDGRGASVHIAGGPCITIQYVNNIIIHGINVHDCKSGGNLNVRDSPDHFGWRTRSDGDGISIFGGSHVWVDHVSLSNC QDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDGFVRDKIMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWLMYAIGGSASPTINSQGNRFLA |
Full Sequence |
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Protein Sequence Length: 407 Download |
MDTQLLSLLL LLTVLQLPPH IASSPVPDPD LVADEVNRII TNATNSRRNL GFLSCKTGNP 60 IDDCWRCDSN WHKNRKRLAD CSIGFGKNAI GGRDGKFYVV TDSGDHPVNP KPGTLRYGVI 120 RDEPLWIVFA RDMVIKLKAE LMMNSFKTID GRGASVHIAG GPCITIQYVN NIIIHGINVH 180 DCKSGGNLNV RDSPDHFGWR TRSDGDGISI FGGSHVWVDH VSLSNCQDGL IDAIHGSTAI 240 TISNNYMTHH NKVMLLGHSD GFVRDKIMQV TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY 300 THWLMYAIGG SASPTINSQG NRFLAPNDRF NKEVTKREEA GESEWKKWNW RSEGDLLLNG 360 AFFTRSGAGA SSSYAKASSL GARPSSLVGP LTSAAGSLVC KKGSSC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-20 | 215 | 323 | 120 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-53 | 143 | 323 | 190 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-64 | 132 | 327 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU21247.1 | 0 | 18 | 406 | 18 | 406 | unknown [Glycine max] |
DDBJ | BAB59066.1 | 0 | 22 | 406 | 27 | 409 | pectate lyase [Salix gilgiana] |
EMBL | CAN76500.1 | 0 | 18 | 406 | 17 | 403 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 18 | 406 | 17 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285340.1 | 0 | 22 | 406 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 59 | 396 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 59 | 396 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-17 | 127 | 324 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.00000000000005 | 136 | 397 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.00000000000005 | 136 | 397 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |