y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10011417 |
Family | GH28 |
Protein Properties | Length: 264 Molecular Weight: 27882.8 Isoelectric Point: 6.7567 |
Chromosome | Chromosome/Scaffold: 1578 Start: 9964 End: 11493 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 6 | 176 | 5.5001e-42 |
RLHVPKGRFLIERSMELKGPCSNNAIFVRIDGTLVAASDIWAINNDPNWIGFSKVDGVTISGGFLDGKGAPLWSCKMNDTQNCPTGATNSKNVIVSRVTS VNTHMFHLVINHCENVRVQGVTLIALGNSLNTDGIHVQLSTGVTIVNSKISTGDDCISIGAGAANLWIENV |
Full Sequence |
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Protein Sequence Length: 264 Download |
MGTGLRLHVP KGRFLIERSM ELKGPCSNNA IFVRIDGTLV AASDIWAINN DPNWIGFSKV 60 DGVTISGGFL DGKGAPLWSC KMNDTQNCPT GATNSKNVIV SRVTSVNTHM FHLVINHCEN 120 VRVQGVTLIA LGNSLNTDGI HVQLSTGVTI VNSKISTGDD CISIGAGAAN LWIENVASGV 180 QVNDVTYEDI QGTSATEVAV KFDCSSEKPC RGIRLENVKL TYDKEPAAVA LSYCAHALGT 240 AIGIVQPTSC LIFASTPSKG NLY* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-9 | 173 | 250 | 78 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 7.0e-18 | 178 | 251 | 74 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-30 | 9 | 234 | 249 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 6.0e-31 | 7 | 179 | 182 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-38 | 9 | 179 | 176 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD33834.1 | 0 | 7 | 179 | 63 | 239 | polygalacturonase [Prunus domestica subsp. insititia] |
RefSeq | XP_002309718.1 | 0 | 7 | 179 | 63 | 238 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002309718.1 | 4e-20 | 177 | 251 | 321 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331662.1 | 0 | 7 | 179 | 59 | 235 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331662.1 | 5e-22 | 177 | 251 | 318 | 389 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00001 | 86 | 233 | 148 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW356389 | 178 | 7 | 179 | 0 |
DW354082 | 178 | 7 | 179 | 0 |
DW353946 | 178 | 7 | 179 | 0 |
DW357715 | 178 | 7 | 179 | 0 |
DW356723 | 178 | 7 | 179 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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