Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10011418 |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 41595.8 Isoelectric Point: 9.5995 |
Chromosome | Chromosome/Scaffold: 1578 Start: 15275 End: 16676 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 382 | 0 |
AWKQACGSTKPVRLYVPKGRFLTKSMELKGPCKNNDIFIRIDGTLLAPSNIWAIGNNPNWIGFQYVDGVTISGGVLDGQGAGLWACKTGGRKCPTGVTSL GFSFSKNVLVSGLTSLNSQMFHIVINFCNNVKLKGVKVSAPENSPNTDGIHVQMSIGVSIVGTKIGTGDDCVSVGPGAANLWIENVSCGPGHGISIGSLG KDVKEAGVQNVTVKSTTFTGTTNGVRIKAWGKQSNGFARNILFQHSTMNNVQNPIIIDQRYCPEHNCADSASGIKVSDVTYQDIHGTSATQVALKFDCSK RNPCKGIRLDNVRLMYKTQPAVASCANAAG |
Full Sequence |
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Protein Sequence Length: 395 Download |
MNKSVLSLLS LLLPIALLSL SPLSSAATLQ LNVVQFGAKP DGKTDSTKAF VAAWKQACGS 60 TKPVRLYVPK GRFLTKSMEL KGPCKNNDIF IRIDGTLLAP SNIWAIGNNP NWIGFQYVDG 120 VTISGGVLDG QGAGLWACKT GGRKCPTGVT SLGFSFSKNV LVSGLTSLNS QMFHIVINFC 180 NNVKLKGVKV SAPENSPNTD GIHVQMSIGV SIVGTKIGTG DDCVSVGPGA ANLWIENVSC 240 GPGHGISIGS LGKDVKEAGV QNVTVKSTTF TGTTNGVRIK AWGKQSNGFA RNILFQHSTM 300 NNVQNPIIID QRYCPEHNCA DSASGIKVSD VTYQDIHGTS ATQVALKFDC SKRNPCKGIR 360 LDNVRLMYKT QPAVASCANA AGTTYGLVQP NSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-82 | 58 | 380 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-85 | 33 | 394 | 371 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-87 | 32 | 390 | 366 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 5.0e-103 | 32 | 393 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-124 | 32 | 394 | 365 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309718.1 | 0 | 11 | 394 | 9 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529089.1 | 0 | 1 | 394 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 3 | 394 | 6 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529091.1 | 0 | 11 | 394 | 8 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529092.1 | 0 | 3 | 394 | 2 | 394 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-19 | 157 | 366 | 159 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000001 | 125 | 346 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000001 | 125 | 346 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000001 | 125 | 346 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000001 | 125 | 346 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |