Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10011419 |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 41628 Isoelectric Point: 7.795 |
Chromosome | Chromosome/Scaffold: 1578 Start: 20170 End: 21779 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 384 | 0 |
AWNQACRSSSPSTIYVPAGRFALRNLAFQGPCKSKAIMFLIDGTLVAPSDYGVIGTIGNWIMFHAVDGVTISGGTLDGRGTALWSCKSKSKSSKDCPEGA TNLEFSNSKNIMINGLTSVNSQLFHIVINSCQNVKVQGVRVSAAGNSPNTDGIHVQSSTGVTITNSRIGTGDDCISIGPGTMNLWIENISCGPGHGISVG SLGKEFHEAGVSNVTVKTVTFTGTENGVRIKSWGRPSTGFAKDILFQHAVMNNVHNPIVIDQNYCPDEKNCPGQASGVKVSDVTYQDIRGSSETEVAVKF TCSGSNPCTGIRLEDVKLTYKNKAADSSCKNADGM |
Full Sequence |
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Protein Sequence Length: 396 Download |
MATFNILFSL ITIIYYLATS AVAVPAQYSI TTYGAKPDGK TDSTEAFLAA WNQACRSSSP 60 STIYVPAGRF ALRNLAFQGP CKSKAIMFLI DGTLVAPSDY GVIGTIGNWI MFHAVDGVTI 120 SGGTLDGRGT ALWSCKSKSK SSKDCPEGAT NLEFSNSKNI MINGLTSVNS QLFHIVINSC 180 QNVKVQGVRV SAAGNSPNTD GIHVQSSTGV TITNSRIGTG DDCISIGPGT MNLWIENISC 240 GPGHGISVGS LGKEFHEAGV SNVTVKTVTF TGTENGVRIK SWGRPSTGFA KDILFQHAVM 300 NNVHNPIVID QNYCPDEKNC PGQASGVKVS DVTYQDIRGS SETEVAVKFT CSGSNPCTGI 360 RLEDVKLTYK NKAADSSCKN ADGMASGVVQ PSSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-91 | 55 | 381 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-97 | 20 | 391 | 376 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-101 | 30 | 395 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-111 | 28 | 394 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-142 | 3 | 395 | 394 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD33834.1 | 0 | 1 | 395 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
RefSeq | XP_002309716.1 | 0 | 1 | 395 | 1 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310385.1 | 0 | 4 | 395 | 10 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 8 | 395 | 9 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529092.1 | 0 | 3 | 395 | 4 | 394 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-24 | 123 | 368 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 2e-18 | 198 | 386 | 178 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 2e-18 | 198 | 386 | 178 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 0.000000000000003 | 121 | 380 | 76 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000003 | 121 | 380 | 76 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |