Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10011758 |
Family | PL1 |
Protein Properties | Length: 422 Molecular Weight: 46207.1 Isoelectric Point: 8.9877 |
Chromosome | Chromosome/Scaffold: 568 Start: 285415 End: 289460 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 135 | 340 | 0 |
IQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDAISIFGSSHIWID HNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTISYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRYNA |
Full Sequence |
---|
Protein Sequence Length: 422 Download |
MVEPLRLFAL CTLLLVGVTG TTQDGGGISG LTLARNVGTE PLQSSSNSSM AARSIHNSTE 60 RRKLGYFSCG TGNPIDDCWR CDPHWQKNRK RLADCGIGFG RNAIGGRDGR YYVVTDPRDD 120 DPVNPRPGTL RHAVIQDRPL WIVFKRDMVI QLKQELIMNS FKTIDGRGAN VHIANGGCIT 180 IQFVTNVIIH GLHIHDCKPT GNAMVRSSPT HYGWRTMADG DAISIFGSSH IWIDHNSLSH 240 CADGLVDAVM GSTAITISNN HMTHHNEVML LGHSDSYTRD KQMQVTISYN HFGEGLIQRM 300 PRCRHGYFHV VNNDYTHWEM YAIGGSANPT INSQGNRYNA PVNRFAKEVT KRVETAATAW 360 KNWNWRSEGD LLLNGAYFTP SGAGASASYA RASSLGAKSS SMVGTITSNA GALGCRRGRQ 420 C* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 7.0e-28 | 160 | 336 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-71 | 153 | 338 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-80 | 147 | 341 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK66161.1 | 0 | 54 | 421 | 1 | 368 | pectate lyase [Fragaria x ananassa] |
GenBank | ACB12931.1 | 0 | 27 | 421 | 34 | 452 | pectate lyase 1-27 [Populus tremula x Populus tremuloides] |
EMBL | CBI33346.1 | 0 | 35 | 421 | 27 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 9 | 421 | 13 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304700.1 | 0 | 27 | 421 | 34 | 452 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 73 | 413 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 73 | 413 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-17 | 142 | 338 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000006 | 163 | 338 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.00000000000002 | 163 | 412 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |