Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10011885 |
Family | PL1 |
Protein Properties | Length: 435 Molecular Weight: 48016.2 Isoelectric Point: 8.1262 |
Chromosome | Chromosome/Scaffold: 754 Start: 240890 End: 244136 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 148 | 353 | 0 |
IQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACLTIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRSMADGDAVSIFGSSHIWVD HNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVILLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQ GNRYLA |
Full Sequence |
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Protein Sequence Length: 435 Download |
MAVSFRFIPL AGLLLVLLMF VAVNAAPADK ESIQQHQQLN LSKVNDGALN EHAVENPEEI 60 AEFVNESIVN STARRNLGYF SCSTGNPIDD CWRCDPYWQA HRKRLANCAI GFGRNAIGGR 120 DGRYYVVTDP NDDDPVNPRP GTLRHAVIQD RPLWIVFKRD MVITLKQELI MNSFKTIDGR 180 GANVHIAYGA CLTIQFVTNV IIHGLHIHDC KPTGNAMVRS SPTHYGWRSM ADGDAVSIFG 240 SSHIWVDHNS LSNCADGLVD AVMGSTAITI SNNYFTHHNE VILLGHSDSY VRDKQMQVTI 300 AYNHFGEGLI QRMPRCRHGY FHVVNNDYTH WEMYAIGGSA DPTINSQGNR YLAPNNPFAK 360 EATKRVDTYN GVWKGWNWRS QGDLFLNGAY FTASGTRAGA SYARASSLAA KPSSLVGMMT 420 GTAGALTCRR GRSC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 6.0e-27 | 173 | 369 | 209 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-70 | 166 | 351 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-81 | 160 | 355 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX88800.1 | 0 | 1 | 434 | 1 | 437 | ripening-related pectate lyase [Mangifera indica] |
EMBL | CAN75298.1 | 0 | 18 | 434 | 27 | 445 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 18 | 434 | 27 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 1 | 434 | 1 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521130.1 | 0 | 1 | 434 | 1 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 86 | 427 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 86 | 427 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-17 | 155 | 353 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000002 | 176 | 328 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000006 | 166 | 355 | 73 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |