| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10012489 |
| Family | GH28 |
| Protein Properties | Length: 434 Molecular Weight: 47086.9 Isoelectric Point: 7.2457 |
| Chromosome | Chromosome/Scaffold: 660 Start: 292807 End: 294777 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 81 | 393 | 0 |
| QACKKCPDPTKLLIPEGIYLSSPVIFQGPCVSQVPILVEVRGNIIASGDLSTYSEDYWFMFNKINGLILNGGGTFDGRGPQVWATVKKGSKGNRPSSIVI RSVDNVVVHDIISVDSKFFHYHVSRCDNFTAFNLRMTAPDDSPNTDGIHISSSNGVHISNSIIATGDDCISVGHGVNNANIFGITCGPGHGISIGSLGKR EGETDVCGITVTNCTLIKTDNGVRIKTFASKIPLKASMITFQDIIMHEVENPIIIDQNYGSKNKNGASNVKVSSVKYKNIRGTTVSNEGVVLDCSTVSGC DGIEFVDVCLDFV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 434 Download |
| MAFETKILSR RVLIFISLLA FLSSFTYGSL KEINIPHRGL HVVDPPPNME VSRKIVDVMH 60 FGAKANGKDD DVMTFMQAWQ QACKKCPDPT KLLIPEGIYL SSPVIFQGPC VSQVPILVEV 120 RGNIIASGDL STYSEDYWFM FNKINGLILN GGGTFDGRGP QVWATVKKGS KGNRPSSIVI 180 RSVDNVVVHD IISVDSKFFH YHVSRCDNFT AFNLRMTAPD DSPNTDGIHI SSSNGVHISN 240 SIIATGDDCI SVGHGVNNAN IFGITCGPGH GISIGSLGKR EGETDVCGIT VTNCTLIKTD 300 NGVRIKTFAS KIPLKASMIT FQDIIMHEVE NPIIIDQNYG SKNKNGASNV KVSSVKYKNI 360 RGTTVSNEGV VLDCSTVSGC DGIEFVDVCL DFVTNPAIQS EKALAAGFTA IFILTNKPFR 420 YFEGYCYTSN LSM* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03010 | PLN03010 | 6.0e-70 | 51 | 384 | 346 | + polygalacturonase |
| PLN02155 | PLN02155 | 2.0e-72 | 55 | 392 | 345 | + polygalacturonase |
| PLN02793 | PLN02793 | 3.0e-74 | 33 | 390 | 369 | + Probable polygalacturonase |
| pfam00295 | Glyco_hydro_28 | 9.0e-83 | 89 | 388 | 304 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02188 | PLN02188 | 5.0e-93 | 55 | 392 | 347 | + polygalacturonase/glycoside hydrolase family protein |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI36886.1 | 0 | 55 | 401 | 44 | 390 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 55 | 392 | 55 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301488.1 | 0 | 72 | 397 | 1 | 328 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301489.1 | 0 | 14 | 397 | 7 | 388 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002336609.1 | 0 | 75 | 390 | 2 | 318 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 1e-16 | 152 | 390 | 81 | 321 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
| PDB | 1ib4_A | 1e-16 | 152 | 390 | 81 | 321 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
| PDB | 1ia5_A | 1e-16 | 152 | 390 | 81 | 321 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1bhe_A | 1e-16 | 151 | 372 | 115 | 342 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 6e-16 | 152 | 363 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
