Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10012720 |
Family | PL4 |
Protein Properties | Length: 670 Molecular Weight: 75334.9 Isoelectric Point: 5.5782 |
Chromosome | Chromosome/Scaffold: 206 Start: 253269 End: 257020 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 39 | 647 | 0 |
SPVKVTTEKEHVLIDNGEIEVKLANPEGFLVGIKYKGIDNVMETHEPEDYGGYYDVSWDVPGGKGQTEQVVGTKFTVVTENENQVEVSFCRVWDSSNKAQ VPLNVDKRFIVQKGVSGFYWYVIVERLKGWPDVDMDQHRMVFRPLIKMFKYMAVSDEIQRIMPAYNDRITGKPLAYPEAVLLTNPVDPEMKEQVDDKYEY SMEMKDHKLKGWISEDPKVGFWVISPSEEYAAGGPNKPELTCHSGPIALAMFTSVHYAGLDMTTEYRNGEPWKKVFGPVFIYLNSIVPSNDYAALWKDAK AQMEKEVQNWPYSFVQSEDYLPAAKRGTVSGQLLVDDKCLSPTPKEGCKAYVGLALPGIEGSWQLEVKGYQHWTEADEKGNFVIKNVNPGTYNLYGWVPG VVGDFKHPEVINVQAGNEVKLGPVTYKSPRNGPTLWEIGIPDRSAAEFYVPDPNPQYVNKFFLDKPNDKYRQYGLWERYAEIYPKDDLVFEVGKSNYSKD WFYAHVLRESGPKNYIPTPWQIVFDLPDVPAAGNYTLQLALASADETNIFIYVNNLNAKAPAFMTQRVGKDNAIARHGIHGVYKFFSACLPSNMFVKGRN TIYLKQARG |
Full Sequence |
---|
Protein Sequence Length: 670 Download |
MKFRILSFIC FVFAALPFNA ALGLPGAIPV PAGNIVPASP VKVTTEKEHV LIDNGEIEVK 60 LANPEGFLVG IKYKGIDNVM ETHEPEDYGG YYDVSWDVPG GKGQTEQVVG TKFTVVTENE 120 NQVEVSFCRV WDSSNKAQVP LNVDKRFIVQ KGVSGFYWYV IVERLKGWPD VDMDQHRMVF 180 RPLIKMFKYM AVSDEIQRIM PAYNDRITGK PLAYPEAVLL TNPVDPEMKE QVDDKYEYSM 240 EMKDHKLKGW ISEDPKVGFW VISPSEEYAA GGPNKPELTC HSGPIALAMF TSVHYAGLDM 300 TTEYRNGEPW KKVFGPVFIY LNSIVPSNDY AALWKDAKAQ MEKEVQNWPY SFVQSEDYLP 360 AAKRGTVSGQ LLVDDKCLSP TPKEGCKAYV GLALPGIEGS WQLEVKGYQH WTEADEKGNF 420 VIKNVNPGTY NLYGWVPGVV GDFKHPEVIN VQAGNEVKLG PVTYKSPRNG PTLWEIGIPD 480 RSAAEFYVPD PNPQYVNKFF LDKPNDKYRQ YGLWERYAEI YPKDDLVFEV GKSNYSKDWF 540 YAHVLRESGP KNYIPTPWQI VFDLPDVPAA GNYTLQLALA SADETNIFIY VNNLNAKAPA 600 FMTQRVGKDN AIARHGIHGV YKFFSACLPS NMFVKGRNTI YLKQARGGEF AFSGVMYDYI 660 RLEGPPAGP* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-28 | 363 | 461 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-47 | 474 | 663 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 5.0e-53 | 41 | 323 | 287 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-65 | 14 | 232 | 221 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99719.1 | 0 | 33 | 665 | 44 | 674 | At2g22620 [Arabidopsis thaliana] |
RefSeq | NP_179847.1 | 0 | 33 | 665 | 44 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 5 | 665 | 15 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 50 | 669 | 1 | 622 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527245.1 | 0 | 50 | 665 | 2 | 618 | lyase, putative [Ricinus communis] |