Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10012942 |
Family | CE8 |
Protein Properties | Length: 384 Molecular Weight: 42234.3 Isoelectric Point: 9.3576 |
Chromosome | Chromosome/Scaffold: 434 Start: 210577 End: 213162 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 86 | 377 | 0 |
TVDKNPVVGDFTSIQEAVDSLPFINLVRVLIKVHAGVYTEKVSIPQLKSFITIEGEGADKTIVQWGDTAQTPGPKGQPMGTYASATFAVNSPFFIARNIT FKNTTPLPAPGAAGKQAVAFRISADNAAFIGCRFLGAQDTLYDQLGRHYYKDCYIEGSVDFIFGNGLSLFEGCEAHAIARNAGAVTAQGRNSMLQDTGFS FVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIILPKGWYNWGDPSRELTVYYGQYKCTGPGASFAGRVAWSRELTDQEAQPFLSLNFIDG |
Full Sequence |
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Protein Sequence Length: 384 Download |
MPTSHSISHL IIIFLLLLLL NSTPTAFSHT KGLKLRKSSK QLPTVNFTRT HFSEQQFMKW 60 VDFVGSLKHS VFKVAKNKLF PSFTLTVDKN PVVGDFTSIQ EAVDSLPFIN LVRVLIKVHA 120 GVYTEKVSIP QLKSFITIEG EGADKTIVQW GDTAQTPGPK GQPMGTYASA TFAVNSPFFI 180 ARNITFKNTT PLPAPGAAGK QAVAFRISAD NAAFIGCRFL GAQDTLYDQL GRHYYKDCYI 240 EGSVDFIFGN GLSLFEGCEA HAIARNAGAV TAQGRNSMLQ DTGFSFVNCK VTGSGALYLG 300 RAWGPFSRVV FAYTYMDNII LPKGWYNWGD PSRELTVYYG QYKCTGPGAS FAGRVAWSRE 360 LTDQEAQPFL SLNFIDGSEW IKF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 3.0e-115 | 84 | 383 | 308 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-115 | 81 | 382 | 302 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 3.0e-117 | 85 | 381 | 298 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-118 | 94 | 381 | 290 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 38 | 382 | 345 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 13 | 382 | 10 | 378 | hypothetical protein [Vitis vinifera] |
EMBL | CBI27989.1 | 0 | 71 | 382 | 1 | 312 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197474.1 | 0 | 29 | 383 | 29 | 383 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330522.1 | 0 | 9 | 383 | 10 | 381 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 1 | 382 | 1 | 382 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 86 | 382 | 4 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.4013e-45 | 94 | 382 | 13 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 4e-28 | 83 | 369 | 31 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 9e-21 | 96 | 369 | 18 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 9e-21 | 96 | 369 | 18 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |