y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10013020 |
Family | GT8 |
Protein Properties | Length: 366 Molecular Weight: 42217.6 Isoelectric Point: 6.005 |
Chromosome | Chromosome/Scaffold: 751 Start: 182592 End: 188919 |
Description | galactinol synthase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 145 | 361 | 3.5e-40 |
LHSLRQRHCAYPLLVAVLPDVPEEHRRRLKDLGCIVTEIEPIYPPANQTQFAMAYYVINYSKLRIWNFSDYSKIIYLDADIQVYGNIDHLFDSPDGYFYS IKDCEQTWSHTPQYGVGYRQQCPDKVMWPANHAMGPPPPLYFNAGMFVFEPNRSTYDALLERLAVSPTPPFAEQDFLNMFSREIYKPILLVYNLVLAMLW RHPENVDVDEVKVVHYC |
Full Sequence |
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Protein Sequence Length: 366 Download |
MGLTFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN 60 ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV VEARDELHRM LNEDELRDAV 120 LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHCAYPLLVA VLPDVPEEHR RRLKDLGCIV 180 TEIEPIYPPA NQTQFAMAYY VINYSKLRIW NFSDYSKIIY LDADIQVYGN IDHLFDSPDG 240 YFYSIKDCEQ TWSHTPQYGV GYRQQCPDKV MWPANHAMGP PPPLYFNAGM FVFEPNRSTY 300 DALLERLAVS PTPPFAEQDF LNMFSREIYK PILLVYNLVL AMLWRHPENV DVDEVKVVHY 360 CATVS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
smart00177 | ARF | 4.0e-102 | 5 | 151 | 147 | + ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). | ||
cd04150 | Arf1_5_like | 9.0e-107 | 18 | 152 | 135 | + ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5). The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). | ||
PTZ00133 | PTZ00133 | 1.0e-107 | 1 | 151 | 151 | + ADP-ribosylation factor; Provisional | ||
PLN00223 | PLN00223 | 1.0e-115 | 1 | 152 | 152 | + ADP-ribosylation factor; Provisional | ||
PLN00176 | PLN00176 | 5.0e-153 | 147 | 365 | 221 | + galactinol synthase |
Gene Ontology | |
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GO Term | Description |
GO:0004871 | signal transducer activity |
GO:0005525 | GTP binding |
GO:0005622 | intracellular |
GO:0005634 | nucleus |
GO:0005737 | cytoplasm |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABQ12641.1 | 0 | 147 | 365 | 43 | 261 | galactinol synthase 2 [Verbascum phoeniceum] |
EMBL | CAB51533.1 | 0 | 133 | 365 | 30 | 263 | galactinol synthase, isoform GolS-1 [Ajuga reptans] |
EMBL | CAN79630.1 | 0 | 99 | 365 | 4 | 264 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002265947.1 | 0 | 133 | 365 | 33 | 266 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320958.1 | 0 | 133 | 365 | 31 | 264 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3aq4_B | 0 | 1 | 152 | 4 | 155 | A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b |
PDB | 3aq4_A | 0 | 1 | 152 | 4 | 155 | A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b |
PDB | 1rrg_B | 0 | 1 | 152 | 1 | 152 | A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form |
PDB | 1rrg_A | 0 | 1 | 152 | 1 | 152 | A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form |
PDB | 1rrf_A | 0 | 1 | 152 | 1 | 152 | A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR063827 | 236 | 133 | 365 | 0 |
JK988329 | 221 | 147 | 365 | 0 |
CD718063 | 219 | 147 | 363 | 0 |
BM437195 | 221 | 147 | 365 | 0 |
DY670953 | 234 | 133 | 363 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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