Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10013025 |
Family | GH28 |
Protein Properties | Length: 487 Molecular Weight: 53509.5 Isoelectric Point: 7.8001 |
Chromosome | Chromosome/Scaffold: 751 Start: 208499 End: 210859 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 95 | 439 | 0 |
AACKVEKSVMFVPEGYQFLVGPISFAGPYCQKSITFQLDGTIVAPTNSYVWGKGLFQWLEFTKLVQITIQGKGTIDGSGSVWWQDSPLSEPEDDLSHQII LLNDTLETRPPMPVRSELSSKMPSQKPTALRFYGSLNVTVTGITIQNSPQCHLKFDNCIGVMVHHISVSSPGDSPNTDGVHLQNSRDVLIHSSSLACGDD CISIQTGCTNVYIHDVNCGPGHGISIGSLGKDNTRACVSNVTVKNVNMHNTMTGVRIKTWQGGSGSVYGIMFSNIQVSEVQFPIVIDQFYCDKSTCKNQS SAVAVSGINYERIKGTYTVKPVHFACSDSQPCADISLANIELKPI |
Full Sequence |
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Protein Sequence Length: 487 Download |
MRGLSFRSFT FMVLIAFLVW SSSIDTCIAR SSRHWRHHRG SAASFMKKKG KSHGSSNHHS 60 NNHNGGGSYL TKFDHISDSK RHTDDRTAFQ ATWAAACKVE KSVMFVPEGY QFLVGPISFA 120 GPYCQKSITF QLDGTIVAPT NSYVWGKGLF QWLEFTKLVQ ITIQGKGTID GSGSVWWQDS 180 PLSEPEDDLS HQIILLNDTL ETRPPMPVRS ELSSKMPSQK PTALRFYGSL NVTVTGITIQ 240 NSPQCHLKFD NCIGVMVHHI SVSSPGDSPN TDGVHLQNSR DVLIHSSSLA CGDDCISIQT 300 GCTNVYIHDV NCGPGHGISI GSLGKDNTRA CVSNVTVKNV NMHNTMTGVR IKTWQGGSGS 360 VYGIMFSNIQ VSEVQFPIVI DQFYCDKSTC KNQSSAVAVS GINYERIKGT YTVKPVHFAC 420 SDSQPCADIS LANIELKPIQ EKYRMYDPYC WETFGELNTP TVPPIGCLQI GKPSSNHPHQ 480 TDHDTC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-69 | 70 | 481 | 421 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-72 | 72 | 436 | 370 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-81 | 101 | 436 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-83 | 83 | 437 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-96 | 83 | 464 | 387 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 486 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_563875.6 | 0 | 2 | 486 | 5 | 532 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 486 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 486 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 486 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-24 | 146 | 387 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 7e-19 | 234 | 410 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-19 | 234 | 410 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-19 | 234 | 410 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-19 | 234 | 410 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |