Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10013267 |
Family | PL1 |
Protein Properties | Length: 232 Molecular Weight: 25735.1 Isoelectric Point: 7.4395 |
Chromosome | Chromosome/Scaffold: 372 Start: 357941 End: 358984 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 3 | 135 | 3.7e-38 |
RDVVDHYGLRTRSDNDGMYGAANVWFDHVSMSNCADGIIDAVVESTGITISNGHITDHNEVMLFGASGSYSKNTIMQITLAFNHFGHGLVQRMPRCRWGF FHVVNNDYTHWLMYAMGGSNHPTIISQGNHFIA |
Full Sequence |
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Protein Sequence Length: 232 Download |
MIRDVVDHYG LRTRSDNDGM YGAANVWFDH VSMSNCADGI IDAVVESTGI TISNGHITDH 60 NEVMLFGASG SYSKNTIMQI TLAFNHFGHG LVQRMPRCRW GFFHVVNNDY THWLMYAMGG 120 SNHPTIISQG NHFIAPQNIA AKESVRATIG NPNIPVLVPG VIEPSGSRTF TSYNYILLTS 180 VKTEHAQPSE WKHWDWISQG DLMMNGAFFV PSGNPQVVNK ITKQQRINQK G* 240 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG3866 | PelB | 2.0e-15 | 16 | 133 | 129 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 1.0e-42 | 1 | 133 | 143 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 1.0e-45 | 2 | 136 | 146 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 1 | 230 | 221 | 416 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272638.1 | 0 | 1 | 215 | 135 | 315 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282500.1 | 0 | 1 | 230 | 153 | 348 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 1 | 229 | 210 | 399 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 230 | 223 | 417 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 8.99998e-41 | 20 | 219 | 155 | 319 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 8.99998e-41 | 20 | 219 | 155 | 319 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000007 | 26 | 145 | 127 | 258 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000006 | 22 | 173 | 151 | 331 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000006 | 22 | 173 | 151 | 331 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG078293 | 232 | 1 | 230 | 0 |
JG078960 | 232 | 1 | 230 | 0 |
JG080770 | 232 | 1 | 230 | 0 |
JG075853 | 232 | 1 | 230 | 0 |
JG080426 | 226 | 1 | 224 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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