Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10013627 |
Family | GT47 |
Protein Properties | Length: 332 Molecular Weight: 38174.6 Isoelectric Point: 9.8287 |
Chromosome | Chromosome/Scaffold: 317 Start: 119252 End: 120326 |
Description | exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 5 | 253 | 0 |
GGAVRVRNSSNADVVFVPFFSSLSFNRFSKVNPHQKKSRNNVLQDKLVQYLTSQEEWKRSGGKDHVVMAHHPNSMLTARMKLWPAMFILSDFGRYPPNVA NVEKDVIAPYKHIVKSYVNDSSEFDTRPTLLYFQGAIYRKDGGLARQELFYLLKDEKDVHFQFGSVKNDGIHKASIGMHSSKFCLNIAGDTPSSNRLFDA IVSHCVPVIISDEIELPYEDVLDYSEFCIFVKTSDAIKENFLINFIRSI |
Full Sequence |
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Protein Sequence Length: 332 Download |
MRMAGGAVRV RNSSNADVVF VPFFSSLSFN RFSKVNPHQK KSRNNVLQDK LVQYLTSQEE 60 WKRSGGKDHV VMAHHPNSML TARMKLWPAM FILSDFGRYP PNVANVEKDV IAPYKHIVKS 120 YVNDSSEFDT RPTLLYFQGA IYRKDGGLAR QELFYLLKDE KDVHFQFGSV KNDGIHKASI 180 GMHSSKFCLN IAGDTPSSNR LFDAIVSHCV PVIISDEIEL PYEDVLDYSE FCIFVKTSDA 240 IKENFLINFI RSINKEEWTR MWQRLKEVEH LFQFQYPSRE GDAVQMIWQA VASKVPGIKM 300 KIHKSSRYSR FVSNQNGGVS NRVIRTPNNF W* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-41 | 42 | 253 | 222 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33321.1 | 0 | 4 | 331 | 184 | 509 | secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] |
RefSeq | XP_002268382.1 | 0 | 4 | 331 | 163 | 488 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319201.1 | 0 | 4 | 309 | 145 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002325457.1 | 0 | 4 | 331 | 138 | 463 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530948.1 | 0 | 4 | 310 | 175 | 481 | catalytic, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG076225 | 288 | 57 | 332 | 0 |
JG591849 | 243 | 68 | 310 | 0 |
EH763854 | 268 | 44 | 311 | 0 |
FG607579 | 302 | 7 | 306 | 0 |
EV571733 | 252 | 62 | 310 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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